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MN703414.1__QGZ17513.1__PBI_DEWDROP_145__00145

Bact-Vir

MN703414.1__QGZ17513.1__PBI_DEWDROP_145__00145

Identity

Accession:
MN703414 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rogerhendrixvirus› Microbacterium_phage_Dewdrop

TaxID: 2686090

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-131
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 48.0 5.35e-01 95.5% 88.2%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.98e-01 98.9% 97.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.61 48.0 4.84e-01 100.0% 84.4%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 43.0 3.63e-01 100.0% 45.1%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 3.49e-01 100.0% 42.4%
2qcsB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 3.81e-01 100.0% 53.6%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.34e-01 100.0% 87.7%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 34.0 3.69e-01 83.1% 68.9%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.57 41.0 4.57e-01 92.1% 98.5%
3muuB02 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.56 39.0 4.21e-01 91.0% 86.3%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 35.0 3.76e-01 75.3% 72.2%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 33.0 3.51e-01 87.6% 65.4%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.19e-01 100.0% 73.1%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.55 45.0 3.12e-01 89.9% 50.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.31e-01 92.1% 86.3%
1vw4X00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.52 32.0 3.60e-01 88.8% 84.4%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 38.0 3.68e-01 92.1% 69.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 40.0 3.25e-01 85.4% 91.0%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 4.00e-01 97.8% 76.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.50 37.0 3.74e-01 79.8% 92.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4019005 10.12.1.30 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 3-HAO 0.65 40.0 3.96e-01 97.8% 57.9%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 5.00e-01 97.8% 92.9%
4201125 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.63 44.0 3.66e-01 100.0% 41.9%
3848483 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.62 50.0 4.88e-01 98.9% 80.6%
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.61 48.0 4.85e-01 100.0% 85.4%
3484700 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.61 41.0 4.00e-01 100.0% 62.0%
3511007 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 42.0 3.84e-01 100.0% 53.3%
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.47e-01 98.9% 84.7%
4880088 10.14.1.1 ↗ beta sandwiches › jelly-roll › Trp RNA-binding attenuation protein (TRAP) › Trp RNA-binding attenuation protein (TRAP) › TrpBP 0.57 40.0 4.49e-01 93.3% 98.5%
5043067 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 48.0 4.20e-01 100.0% 63.6%
3602032 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.60e-01 88.8% 81.2%
3276661 4004.1.1.6 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › Pacs-1 0.54 48.0 3.98e-01 100.0% 75.2%
5037835 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 40.0 3.58e-01 79.8% 93.6%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 42.0 4.48e-01 97.8% 95.0%
4940079 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 3.80e-01 85.4% 82.7%
5030173 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 4.05e-01 91.0% 88.7%
3363456 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 38.0 3.42e-01 100.0% 55.2%
3314109 10.2.1.74 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › WAK 0.51 44.0 3.71e-01 98.9% 85.0%
4076721 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.50 39.0 3.68e-01 96.6% 67.3%
3196282 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.50 34.0 3.14e-01 71.9% 55.8%