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MN718199.1__QGZ16017.1__Kuja_0260__00026

Bact-Vir

MN718199.1__QGZ16017.1__Kuja_0260__00026

Identity

Accession:
MN718199 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Kujavirus› Vibrio_phage_vB_VchM_Kuja

TaxID: 2686437

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-47
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfvC00 6.10.250.2010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 57.0 5.00e-01 100.0% 55.0%
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 60.0 3.73e-01 97.6% 38.8%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.71 52.0 3.41e-01 78.0% 19.9%
4ifdK02 6.10.250.2660 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 49.0 5.32e-01 95.1% 91.2%
1ccwB02 3.90.970.10 Alpha Beta › Alpha-Beta Complex › Glutamate mutase, C-terminal domain › 0.69 43.0 3.70e-01 70.7% 37.9%
3zg9A00 6.20.370.110 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.68 36.0 3.66e-01 80.5% 48.8%
1q45A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 56.0 3.30e-01 100.0% 15.9%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.64 58.0 3.69e-01 100.0% 37.7%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.64 51.0 3.37e-01 95.1% 89.2%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.62 55.0 3.80e-01 97.6% 95.4%
3hwcA01 1.10.3140.10 Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 0.60 40.0 2.76e-01 70.7% 21.8%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 51.0 3.47e-01 95.1% 34.7%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 38.0 2.77e-01 75.6% 20.8%
4y2fA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 50.0 3.49e-01 100.0% 74.1%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 47.0 3.69e-01 100.0% 97.1%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.57 51.0 4.23e-01 100.0% 59.2%
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 46.0 3.09e-01 100.0% 90.1%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.40e-01 90.2% 50.6%
1pmtA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 37.0 2.88e-01 80.5% 45.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4172535 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.82 52.0 4.33e-01 75.6% 41.5%
5031058 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.75 48.0 3.97e-01 75.6% 38.6%
3994831 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.72 59.0 3.64e-01 100.0% 23.5%
3515355 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.72 47.0 3.11e-01 70.7% 17.4%
4610901 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.69 55.0 4.32e-01 92.7% 42.4%
4037529 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.68 54.0 4.14e-01 95.1% 37.9%
4053035 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.67 52.0 4.09e-01 90.2% 41.2%
3295061 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 52.0 3.66e-01 100.0% 29.2%
1566324 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 50.0 3.25e-01 100.0% 22.9%
4999722 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 45.0 3.51e-01 95.1% 67.4%
3783880 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.55 37.0 3.02e-01 78.0% 99.0%
5017310 275.1.1.5 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.51 39.0 3.34e-01 82.9% 78.5%