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MN718199.1__QGZ16031.1__Kuja_0400__00040

Bact-Vir

MN718199.1__QGZ16031.1__Kuja_0400__00040

Identity

Accession:
MN718199 ↗
Kingdom:
phage

Quality

73.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Kujavirus› Vibrio_phage_vB_VchM_Kuja

TaxID: 2686437

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-83
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.76 54.0 4.22e-01 77.6% 36.2%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 46.0 4.18e-01 73.1% 78.0%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.50e-01 85.1% 74.7%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 41.0 3.80e-01 70.1% 81.9%
3rjvA02 1.25.40.740 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 42.0 4.30e-01 86.6% 78.1%
4f7nB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 45.0 3.59e-01 85.1% 66.9%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 45.0 3.85e-01 97.0% 54.4%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 44.0 4.18e-01 86.6% 71.1%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 48.0 3.29e-01 94.0% 50.7%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 43.0 3.87e-01 91.0% 59.4%
7miqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 47.0 4.01e-01 95.5% 78.2%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 44.0 3.74e-01 94.0% 53.6%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.52 41.0 3.87e-01 92.5% 70.6%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 38.0 4.07e-01 92.5% 89.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4091013 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.70 50.0 3.64e-01 77.6% 27.8%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.69 48.0 4.64e-01 73.1% 80.0%
4235730 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.64 47.0 4.92e-01 80.6% 88.3%
3441901 632.1.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N 0.60 40.0 3.80e-01 70.1% 62.5%
3791793 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.59 43.0 4.03e-01 79.1% 85.9%
3232753 632.2.1.21 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › ANIS5_cation-bd 0.58 44.0 4.41e-01 89.6% 78.6%
3263245 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.57 41.0 3.97e-01 77.6% 69.2%
5024245 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.56 40.0 3.34e-01 73.1% 72.7%
3468013 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.56 39.0 3.50e-01 74.6% 73.0%
4058620 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.56 45.0 3.98e-01 89.6% 62.0%
2492494 601.33.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.56 45.0 4.07e-01 91.0% 79.8%
3502686 2484.1.1.88 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ParM_N 0.55 46.0 3.42e-01 89.6% 36.4%
4640227 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.55 37.0 3.03e-01 83.6% 34.3%
4491672 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.55 44.0 3.32e-01 86.6% 36.3%
4024119 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.28e-01 100.0% 55.3%
None — 0.53 40.0 2.32e-01 83.6% 22.1%
4395233 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.53 47.0 3.67e-01 100.0% 71.7%
5052222 3812.1.1.0 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.52 37.0 3.51e-01 79.1% 84.7%
3610730 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 43.0 3.74e-01 100.0% 77.4%
3504908 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.50 41.0 3.70e-01 95.5% 65.0%