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MN718199.1__QGZ16100.1__Kuja_1090__00109
Bact-VirMN718199.1__QGZ16100.1__Kuja_1090__00109
Identity
- Accession:
- MN718199 ↗
- Kingdom:
- phage
Quality
72.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Kujavirus›
Vibrio_phage_vB_VchM_Kuja
TaxID: 2686437
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-89
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.75 | 55.0 | 4.51e-01 | 82.5% | 43.0% |
| 3fnrA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.71 | 53.0 | 4.06e-01 | 81.0% | 40.7% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.70 | 61.0 | 4.67e-01 | 100.0% | 55.7% |
| 2wdqD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.70 | 51.0 | 4.38e-01 | 79.4% | 55.2% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 49.0 | 4.21e-01 | 81.0% | 45.6% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.69 | 53.0 | 4.99e-01 | 82.5% | 80.5% |
| 3fmsA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.69 | 62.0 | 4.77e-01 | 100.0% | 73.0% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 61.0 | 5.20e-01 | 100.0% | 66.7% |
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.69 | 51.0 | 3.24e-01 | 81.0% | 67.8% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 50.0 | 5.03e-01 | 82.5% | 76.9% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 51.0 | 5.05e-01 | 82.5% | 89.7% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.67 | 50.0 | 4.49e-01 | 81.0% | 60.0% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.66 | 50.0 | 4.56e-01 | 82.5% | 86.2% |
| 3dzaA01 | 1.20.120.1940 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain | 0.66 | 59.0 | 4.80e-01 | 100.0% | 66.7% |
| 1rj1A00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.66 | 58.0 | 4.44e-01 | 98.4% | 88.5% |
| 4bg5B00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.66 | 56.0 | 4.04e-01 | 100.0% | 71.4% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.65 | 50.0 | 4.79e-01 | 81.0% | 88.7% |
| 1r0dA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.63 | 55.0 | 3.93e-01 | 98.4% | 68.4% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.63 | 53.0 | 4.86e-01 | 98.4% | 82.8% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 47.0 | 4.62e-01 | 81.0% | 77.6% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.62 | 53.0 | 4.86e-01 | 100.0% | 71.1% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 52.0 | 4.25e-01 | 100.0% | 59.4% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.62 | 55.0 | 4.32e-01 | 98.4% | 80.5% |
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 53.0 | 4.30e-01 | 98.4% | 64.3% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 54.0 | 4.21e-01 | 100.0% | 89.1% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.61 | 45.0 | 4.09e-01 | 81.0% | 98.9% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 44.0 | 4.48e-01 | 79.4% | 85.7% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 43.0 | 4.64e-01 | 79.4% | 90.7% |
| 2g38B00 | 1.20.1260.20 | Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily | 0.57 | 49.0 | 3.63e-01 | 98.4% | 82.7% |
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.55 | 45.0 | 3.57e-01 | 93.7% | 46.4% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.55 | 38.0 | 3.24e-01 | 93.7% | 42.0% |
| 3crmA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.54 | 42.0 | 3.95e-01 | 92.1% | 69.0% |
| 4dwpA01 | 6.10.140.1780 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 44.0 | 3.96e-01 | 96.8% | 100.0% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.52 | 43.0 | 3.22e-01 | 100.0% | 35.6% |
| 4akgA13 | 1.10.8.740 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 43.0 | 3.90e-01 | 96.8% | 67.1% |
| 3fhdA01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.50 | 41.0 | 3.30e-01 | 95.2% | 49.3% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024220 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.75 | 65.0 | 5.54e-01 | 100.0% | 65.7% |
| 3495283 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.72 | 61.0 | 4.85e-01 | 98.4% | 63.7% |
| 4015520 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.72 | 63.0 | 4.67e-01 | 100.0% | 49.7% |
| 3200734 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.71 | 63.0 | 4.64e-01 | 100.0% | 49.7% |
| 4300173 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.70 | 60.0 | 4.70e-01 | 100.0% | 50.0% |
| 3997194 | 150.1.1.102 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PF31009 | 0.69 | 60.0 | 4.62e-01 | 100.0% | 64.7% |
| 3976635 | 602.3.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain › T6SS_VasE | 0.69 | 60.0 | 4.81e-01 | 98.4% | 62.4% |
| 3212207 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.68 | 52.0 | 3.99e-01 | 81.0% | 40.7% |
| 4520107 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.68 | 57.0 | 4.55e-01 | 100.0% | 51.4% |
| 4546061 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.68 | 58.0 | 4.61e-01 | 100.0% | 63.7% |
| 3945517 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.66 | 51.0 | 4.43e-01 | 82.5% | 56.8% |
| 5043394 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.66 | 57.0 | 5.27e-01 | 96.8% | 87.5% |
| 3799465 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.66 | 51.0 | 3.80e-01 | 84.1% | 95.0% |
| 3222544 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.66 | 49.0 | 3.86e-01 | 82.5% | 38.5% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.66 | 50.0 | 4.46e-01 | 82.5% | 65.6% |
| 3195268 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.65 | 56.0 | 4.44e-01 | 98.4% | 85.9% |
| 3957887 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.65 | 57.0 | 4.11e-01 | 96.8% | 81.7% |
| 4108723 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.64 | 48.0 | 4.23e-01 | 82.5% | 53.7% |
| 3369165 | 109.4.1.1525 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase | 0.64 | 50.0 | 3.23e-01 | 84.1% | 26.1% |
| 3953913 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.64 | 56.0 | 4.06e-01 | 96.8% | 81.7% |
| 4011838 | 5001.1.1.85 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin | 0.64 | 56.0 | 3.71e-01 | 100.0% | 48.5% |
| 3926706 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.64 | 49.0 | 4.21e-01 | 82.5% | 57.0% |
| 3185197 | 192.5.1.17 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF202 | 0.64 | 55.0 | 4.37e-01 | 100.0% | 63.0% |
| 4964854 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.63 | 53.0 | 4.23e-01 | 100.0% | 48.3% |
| 4805104 | 601.19.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein | 0.63 | 47.0 | 4.34e-01 | 84.1% | 61.4% |
| 3993692 | 604.1.1.179 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF30976 | 0.63 | 46.0 | 3.98e-01 | 81.0% | 50.5% |
| 4153322 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.63 | 55.0 | 3.90e-01 | 98.4% | 77.4% |
| 3246869 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.62 | 49.0 | 3.32e-01 | 87.3% | 54.2% |
| 3400926 | 3758.1.1.45 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Not3 | 0.62 | 55.0 | 4.52e-01 | 100.0% | 82.6% |
| 3970705 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.62 | 54.0 | 4.95e-01 | 95.2% | 76.2% |
| 3287650 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.62 | 54.0 | 3.94e-01 | 98.4% | 81.7% |
| 3471803 | 5038.2.1.1 ↗ | alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG | 0.61 | 52.0 | 4.29e-01 | 100.0% | 72.8% |
| 4038742 | 150.5.1.53 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE | 0.61 | 53.0 | 4.60e-01 | 95.2% | 93.7% |
| 3806181 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.61 | 46.0 | 3.67e-01 | 82.5% | 52.3% |
| 3325847 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.60 | 46.0 | 3.29e-01 | 82.5% | 35.8% |
| 3802240 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.60 | 51.0 | 4.47e-01 | 98.4% | 86.0% |
| 3615404 | 1189.1.1.6 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › ISG65-75 | 0.59 | 52.0 | 3.32e-01 | 98.4% | 22.0% |
| 3648415 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.58 | 44.0 | 3.49e-01 | 82.5% | 50.4% |
| 3440543 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.58 | 42.0 | 2.53e-01 | 77.8% | 10.5% |
| 3974536 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 42.0 | 2.56e-01 | 81.0% | 11.8% |
| 3826524 | 109.4.1.1610 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, E_motif | 0.57 | 46.0 | 3.04e-01 | 90.5% | 45.8% |
| 3343494 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.57 | 41.0 | 3.05e-01 | 77.8% | 40.0% |
| 3588718 | 633.19.1.0 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain | 0.55 | 47.0 | 4.52e-01 | 98.4% | 88.0% |
| 3368996 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.55 | 41.0 | 2.70e-01 | 81.0% | 22.8% |
| 3337015 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.55 | 42.0 | 2.85e-01 | 84.1% | 27.5% |
| 3408675 | 3922.1.1.132 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Enkurin | 0.55 | 46.0 | 3.88e-01 | 92.1% | 64.8% |
| 3302659 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 43.0 | 3.50e-01 | 85.7% | 87.8% |
| 3669847 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.53 | 42.0 | 2.90e-01 | 88.9% | 57.7% |
| 3451428 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.52 | 39.0 | 2.74e-01 | 82.5% | 41.3% |
| 3680264 | 109.4.1.1295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 | 0.51 | 43.0 | 2.66e-01 | 95.2% | 32.6% |