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MN718199.1__QGZ16118.1__Kuja_1270__00127
Bact-VirMN718199.1__QGZ16118.1__Kuja_1270__00127
Identity
- Accession:
- MN718199 ↗
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Kujavirus›
Vibrio_phage_vB_VchM_Kuja
TaxID: 2686437
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-102
D2
high
residues 105-244
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.63 | 46.0 | 5.09e-01 | 95.0% | 95.6% |
| 1wp9B03 | 1.20.1320.20 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain | 0.62 | 33.0 | 3.45e-01 | 79.3% | 53.8% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.57 | 51.0 | 3.94e-01 | 100.0% | 79.5% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 34.0 | 4.23e-01 | 77.1% | 100.0% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 30.0 | 3.27e-01 | 100.0% | 59.8% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.56 | 44.0 | 4.57e-01 | 95.7% | 91.4% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 50.0 | 4.88e-01 | 96.4% | 100.0% |
| 2xgvA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.55 | 44.0 | 4.50e-01 | 84.3% | 100.0% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 33.0 | 3.30e-01 | 97.1% | 55.6% |
| 1f1mA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.55 | 49.0 | 4.74e-01 | 100.0% | 88.3% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.55 | 45.0 | 4.78e-01 | 99.3% | 100.0% |
| 1wolA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 45.0 | 4.75e-01 | 96.4% | 99.2% |
| 1yjgA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.54 | 48.0 | 4.70e-01 | 100.0% | 96.8% |
| 7degA01 | 1.20.210.10 | Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain | 0.54 | 48.0 | 3.22e-01 | 98.6% | 86.2% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 34.0 | 3.58e-01 | 76.4% | 71.3% |
| 6elqA01 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 36.0 | 3.33e-01 | 100.0% | 54.0% |
| 2j0nB00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.53 | 48.0 | 4.35e-01 | 100.0% | 88.8% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.52 | 47.0 | 4.65e-01 | 100.0% | 94.5% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.52 | 48.0 | 3.89e-01 | 100.0% | 96.9% |
| 1a22A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 47.0 | 4.38e-01 | 100.0% | 94.4% |
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 47.0 | 3.88e-01 | 100.0% | 79.0% |
| 4rfsS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.52 | 38.0 | 3.43e-01 | 75.0% | 73.3% |
| 3c8eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 37.0 | 3.58e-01 | 73.6% | 83.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041715 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.71 | 41.0 | 4.61e-01 | 100.0% | 72.7% |
| 4662222 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.69 | 40.0 | 4.30e-01 | 100.0% | 65.8% |
| 4457710 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.69 | 39.0 | 4.27e-01 | 100.0% | 65.8% |
| 4981980 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.68 | 37.0 | 4.02e-01 | 100.0% | 62.6% |
| 3317793 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.65 | 35.0 | 3.46e-01 | 100.0% | 50.0% |
| 5062471 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 37.0 | 4.20e-01 | 100.0% | 71.8% |
| 3781291 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 36.0 | 4.19e-01 | 100.0% | 76.0% |
| 3930730 | 3615.1.1.24 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CDK5RAP3 | 0.59 | 39.0 | 3.91e-01 | 83.6% | 65.0% |
| 3905682 | 601.29.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like | 0.56 | 41.0 | 4.55e-01 | 97.1% | 100.0% |
| 3743480 | 3562.1.1.16 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Frag1 | 0.56 | 51.0 | 4.33e-01 | 100.0% | 91.3% |
| 3586388 | 10.12.1.101 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 | 0.56 | 41.0 | 2.94e-01 | 76.4% | 90.2% |
| 140763 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.55 | 44.0 | 4.50e-01 | 84.3% | 100.0% |
| 3902312 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.55 | 44.0 | 4.41e-01 | 94.3% | 82.1% |
| 2138586 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.55 | 44.0 | 4.48e-01 | 85.7% | 100.0% |
| 3692616 | 109.4.1.1755 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N, UTP20, UTP20_C | 0.54 | 38.0 | 2.08e-01 | 70.0% | 7.3% |
| 5050045 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 47.0 | 4.61e-01 | 100.0% | 98.0% |
| 3728252 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.51 | 37.0 | 3.59e-01 | 79.3% | 65.8% |
| 3331044 | 109.4.1.1155 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_At3g06530 | 0.51 | 38.0 | 3.06e-01 | 77.9% | 58.2% |
| 4001803 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 45.0 | 3.76e-01 | 100.0% | 55.6% |