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MN718463.1__QGZ13306.1__phiCDKH01_07__00007

Bact-Vir

MN718463.1__QGZ13306.1__phiCDKH01_07__00007

Identity

Accession:
MN718463 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCDKH01

TaxID: 2686203

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-54
PDB
Domain cluster: rep: OR574845.1__WQZ00100.1__CS5676_0032__00031__D6-56
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.85 65.0 6.31e-01 100.0% 75.0%
1mvfD00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.82 65.0 6.67e-01 100.0% 93.2%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.81 64.0 5.49e-01 100.0% 54.7%
3tndB01 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.73 53.0 5.56e-01 100.0% 92.7%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.70 54.0 5.18e-01 100.0% 73.7%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 3.16e-01 100.0% 29.7%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.58 44.0 3.10e-01 85.1% 40.4%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.55 29.0 2.28e-01 91.5% 21.1%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 40.0 2.61e-01 87.2% 16.2%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 45.0 3.43e-01 100.0% 61.4%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 41.0 2.67e-01 100.0% 75.9%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.52 41.0 3.22e-01 100.0% 66.4%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.50 39.0 2.98e-01 100.0% 70.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955687 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 63.0 6.09e-01 100.0% 69.8%
4639978 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 64.0 6.13e-01 100.0% 69.1%
4986319 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 58.0 5.68e-01 72.3% 66.0%
4085449 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 69.0 5.82e-01 100.0% 54.7%
5029523 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.85 71.0 7.11e-01 100.0% 89.6%
5001623 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.85 69.0 6.80e-01 100.0% 84.0%
5031005 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 63.0 6.01e-01 100.0% 69.1%
5030593 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 63.0 5.98e-01 100.0% 69.1%
4982519 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 63.0 6.19e-01 100.0% 76.0%
3984485 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 66.0 5.54e-01 100.0% 51.2%
3503896 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.82 65.0 6.62e-01 100.0% 91.1%
4941025 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.80 60.0 6.03e-01 100.0% 81.6%
4969278 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.79 58.0 5.93e-01 100.0% 84.4%
4959387 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 61.0 6.26e-01 100.0% 91.1%
5059110 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.78 58.0 5.93e-01 100.0% 86.7%
4992541 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 60.0 5.44e-01 100.0% 63.1%
4967881 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.77 58.0 5.57e-01 100.0% 72.2%
5027722 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.77 62.0 6.28e-01 100.0% 93.3%
4993826 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.77 60.0 6.04e-01 100.0% 85.4%
5035358 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.76 66.0 6.32e-01 100.0% 92.7%
3038102 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.73 62.0 5.93e-01 100.0% 91.1%
352168 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.67 48.0 4.68e-01 100.0% 69.1%
4977171 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.64 52.0 5.05e-01 100.0% 90.7%
3440138 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.63 52.0 4.51e-01 100.0% 58.7%
3451717 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.62 51.0 4.36e-01 100.0% 55.3%
3272533 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 39.0 2.30e-01 70.2% 44.0%
3505182 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.47e-01 100.0% 48.8%
5046019 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 34.0 2.92e-01 72.3% 39.2%
3694970 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 41.0 2.83e-01 100.0% 67.6%
3735629 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 38.0 2.32e-01 97.9% 33.8%
3511720 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.50 40.0 2.55e-01 95.7% 48.6%