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MN732867.1__QGZ16354.1__Hena1_02040__00177

Bact-Vir

MN732867.1__QGZ16354.1__Hena1_02040__00177

Identity

Accession:
MN732867 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-63
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 66.0 5.69e-01 84.1% 55.2%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.84 60.0 5.73e-01 77.8% 64.9%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.83 60.0 4.43e-01 77.8% 30.8%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.83 64.0 4.71e-01 85.7% 34.0%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.83 60.0 4.76e-01 77.8% 39.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.81 59.0 5.18e-01 79.4% 52.7%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.79 62.0 4.25e-01 87.3% 25.4%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 59.0 5.95e-01 81.0% 80.6%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 61.0 3.98e-01 84.1% 20.6%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.78 67.0 5.41e-01 93.7% 52.1%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 56.0 5.86e-01 77.8% 84.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.77 64.0 6.33e-01 88.9% 92.3%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 64.0 4.48e-01 90.5% 30.5%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.76 68.0 5.55e-01 100.0% 94.0%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 59.0 5.22e-01 85.7% 58.2%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 54.0 4.93e-01 77.8% 56.5%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.76 62.0 5.60e-01 90.5% 68.6%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.75 59.0 5.56e-01 88.9% 70.1%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.75 58.0 4.74e-01 87.3% 45.3%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.75 57.0 5.59e-01 82.5% 85.3%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.75 58.0 5.87e-01 82.5% 85.2%
1st6A03 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.74 63.0 4.25e-01 93.7% 25.8%
1u5eA01 6.10.250.220 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 51.0 5.48e-01 76.2% 88.7%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 57.0 4.90e-01 87.3% 70.6%
6qelA01 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.72 57.0 4.24e-01 84.1% 81.5%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 52.0 4.86e-01 77.8% 63.0%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 58.0 5.48e-01 88.9% 86.8%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.72 60.0 5.36e-01 92.1% 67.0%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.71 54.0 3.34e-01 82.5% 24.5%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 45.0 4.93e-01 73.0% 85.7%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.69 54.0 4.34e-01 85.7% 72.8%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.69 51.0 3.91e-01 90.5% 33.6%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 58.0 4.58e-01 96.8% 61.8%
5u56A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 52.0 4.39e-01 87.3% 56.2%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.66 53.0 4.80e-01 87.3% 66.3%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.65 56.0 4.27e-01 100.0% 92.4%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 48.0 4.04e-01 82.5% 59.3%
4r16A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 3.38e-01 88.9% 82.0%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 48.0 3.67e-01 100.0% 80.7%
6b8hO01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.54 38.0 3.37e-01 76.2% 75.8%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.87e-01 90.5% 91.5%
1ywfA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 41.0 2.93e-01 96.8% 51.9%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.51 39.0 4.03e-01 92.1% 93.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3472977 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 61.0 5.06e-01 77.8% 43.8%
3885709 192.13.1.0 alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.86 66.0 6.21e-01 81.0% 68.0%
3569141 632.22.1.28 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › JAKMIP_CC3 0.86 68.0 4.78e-01 84.1% 30.0%
3913296 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.86 68.0 4.86e-01 84.1% 31.8%
3869122 4207.1.2.0 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.86 69.0 5.04e-01 85.7% 35.5%
3427778 604.1.1.144 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26575 0.85 62.0 5.67e-01 76.2% 65.0%
3708446 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.84 65.0 5.89e-01 84.1% 62.4%
3477926 3281.1.1.0 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related 0.83 57.0 6.67e-01 81.0% 100.0%
3618077 603.1.1.149 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Frag1 0.82 64.0 5.02e-01 90.5% 41.6%
3294437 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.82 66.0 6.05e-01 87.3% 68.8%
4259224 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.81 64.0 4.77e-01 85.7% 34.8%
4166693 7013.1.1.1 alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 0.81 63.0 4.44e-01 84.1% 28.6%
3961148 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.81 63.0 5.04e-01 84.1% 62.5%
4311810 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 62.0 5.89e-01 84.1% 70.7%
3832382 5069.1.3.60 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 0.80 66.0 5.24e-01 88.9% 84.2%
4608212 397.7.1.1 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N 0.79 63.0 6.32e-01 85.7% 83.1%
4100012 327.13.1.5 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAH 0.79 72.0 5.77e-01 100.0% 93.2%
5084060 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.79 63.0 4.65e-01 85.7% 35.5%
4146694 192.29.1.277 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin 0.79 63.0 6.32e-01 87.3% 84.6%
4294845 397.7.1.1 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N 0.79 63.0 6.47e-01 90.5% 90.0%
5047797 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.78 65.0 6.10e-01 88.9% 74.7%
3783731 2004.1.1.505 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 0.78 61.0 3.67e-01 85.7% 13.3%
3362890 7519.1.1.0 a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit 0.77 64.0 5.55e-01 90.5% 91.6%
3518386 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.77 57.0 5.45e-01 81.0% 68.0%
3969538 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.77 59.0 6.27e-01 82.5% 98.2%
4436874 397.7.1.1 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N 0.76 52.0 5.95e-01 77.8% 100.0%
3314132 376.1.6.10 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 0.75 60.0 4.53e-01 87.3% 51.3%
3857829 2485.1.1.17 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 0.75 61.0 5.05e-01 88.9% 87.3%
3555578 633.22.1.15 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › OST3_OST6 0.75 61.0 5.04e-01 88.9% 87.3%
4946898 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.74 59.0 5.58e-01 85.7% 74.7%
3626562 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 57.0 3.91e-01 84.1% 24.5%
3618935 192.15.1.77 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.74 61.0 4.99e-01 90.5% 84.3%
3933449 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.74 61.0 5.44e-01 92.1% 88.9%
3625265 5059.1.1.27 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › ChitinSynthase_IV_N 0.73 66.0 3.94e-01 100.0% 71.8%
3808540 376.1.6.9 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.73 58.0 4.40e-01 85.7% 51.3%
4361794 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.71 57.0 3.96e-01 90.5% 46.0%
1769448 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.71 57.0 4.60e-01 90.5% 79.4%
3838594 7023.1.1.0 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.70 62.0 4.90e-01 96.8% 60.8%
3215079 5059.1.1.27 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › ChitinSynthase_IV_N 0.69 58.0 3.46e-01 90.5% 70.7%
3819233 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.69 58.0 4.76e-01 93.7% 84.3%
4567807 397.7.1.6 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 0.67 44.0 4.44e-01 73.0% 66.2%
4232718 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.66 53.0 4.66e-01 92.1% 100.0%
3950977 5058.1.1.9 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V 0.65 57.0 4.28e-01 98.4% 56.1%
3923777 5059.1.1.27 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › ChitinSynthase_IV_N 0.65 58.0 3.51e-01 100.0% 72.6%
4648753 605.1.1.278 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Attractin 0.64 53.0 5.46e-01 92.1% 96.7%
4097040 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.62 49.0 4.35e-01 92.1% 96.0%
3284602 2003.1.1.61 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR 0.59 47.0 3.00e-01 87.3% 18.1%
3993948 571.1.1.0 alpha arrays › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) 0.54 44.0 4.38e-01 92.1% 86.2%
D2 medium residues 64-118
PDB
Domain cluster: representative