←Back to structures

MN732896.1__QGZ15843.1__X__00008

Bact-Vir

MN732896.1__QGZ15843.1__X__00008

Identity

Accession:
MN732896 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Elizabethkingia_phage_TCUEAP1

TaxID: 2686291

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-84
PDB
Domain cluster: rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00359__D2-57
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 45.0 4.60e-01 100.0% 57.1%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.70 38.0 4.52e-01 93.9% 79.5%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.69 41.0 4.77e-01 95.5% 84.8%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.67 58.0 5.18e-01 98.5% 74.5%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.66 58.0 5.28e-01 100.0% 76.9%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 5.03e-01 100.0% 92.2%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 44.0 4.99e-01 89.4% 97.9%
2d3aA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.64 57.0 4.96e-01 100.0% 76.2%
5c6dA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 55.0 4.70e-01 100.0% 81.3%
6dddH00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.62 54.0 4.87e-01 100.0% 75.3%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 51.0 4.53e-01 89.4% 62.8%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.62 54.0 3.75e-01 97.0% 47.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 42.0 4.54e-01 92.4% 100.0%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 52.0 4.69e-01 100.0% 80.9%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 52.0 4.46e-01 100.0% 71.3%
3u0jA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.59 44.0 3.15e-01 86.4% 45.7%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 47.0 4.72e-01 95.5% 89.4%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 46.0 3.93e-01 97.0% 55.0%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.84e-01 100.0% 58.7%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 43.0 3.28e-01 97.0% 33.1%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 41.0 4.13e-01 98.5% 76.5%
3i57A01 3.10.20.470 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 48.0 4.62e-01 100.0% 97.3%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.54 46.0 4.01e-01 100.0% 96.3%
1x1mA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 4.00e-01 100.0% 81.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 41.0 3.35e-01 86.4% 81.4%
2olgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 45.0 3.67e-01 97.0% 68.2%
1r94A00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.53 35.0 3.18e-01 98.5% 47.4%
2dnfA01 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.53 45.0 4.17e-01 100.0% 83.1%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 3.29e-01 100.0% 50.8%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.29e-01 84.8% 91.1%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 2.73e-01 89.4% 63.3%
4mqdA00 2.60.34.30 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Competence, DNA-entry nuclease inhibitor, ComJ 0.50 43.0 3.51e-01 100.0% 90.2%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.76 48.0 4.43e-01 100.0% 50.6%
4944212 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 56.0 5.05e-01 89.4% 62.5%
4061290 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.71 62.0 6.03e-01 98.5% 86.3%
4967823 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.71 64.0 6.14e-01 100.0% 97.3%
4618294 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.71 62.0 5.51e-01 98.5% 72.6%
4433128 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.70 62.0 5.49e-01 98.5% 73.7%
4344650 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.69 61.0 5.36e-01 100.0% 74.0%
4161236 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.69 62.0 5.59e-01 100.0% 77.8%
4065090 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.69 59.0 5.32e-01 98.5% 73.7%
4139867 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.69 60.0 5.35e-01 98.5% 72.6%
4120365 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.69 60.0 5.25e-01 98.5% 70.0%
4399696 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.68 59.0 5.28e-01 98.5% 73.7%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.68 44.0 4.14e-01 100.0% 53.8%
4062422 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.68 59.0 5.29e-01 98.5% 73.7%
4950268 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 49.0 5.14e-01 86.4% 83.3%
4452640 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.67 59.0 5.28e-01 100.0% 72.6%
4168875 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.67 58.0 5.18e-01 98.5% 72.6%
4145938 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.67 58.0 5.07e-01 98.5% 69.0%
4959949 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.66 52.0 5.23e-01 92.4% 86.2%
4065495 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.66 57.0 5.05e-01 98.5% 70.0%
5054112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.29e-01 100.0% 84.6%
4601397 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.66 57.0 5.10e-01 98.5% 73.7%
5078127 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 54.0 4.93e-01 87.9% 96.5%
3589736 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 51.0 5.09e-01 90.9% 80.0%
4209479 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.66 57.0 5.00e-01 98.5% 69.0%
3510186 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.66 58.0 5.18e-01 100.0% 73.7%
4946739 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.65 51.0 5.22e-01 100.0% 89.2%
4118502 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.65 58.0 5.13e-01 100.0% 73.7%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.65 44.0 4.03e-01 80.3% 54.1%
4672167 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.65 58.0 5.13e-01 100.0% 71.6%
4998118 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.65 55.0 5.61e-01 100.0% 95.4%
4197235 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.65 57.0 5.07e-01 100.0% 73.7%
4864109 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 55.0 4.88e-01 98.5% 72.2%
5055336 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.64 51.0 4.57e-01 89.4% 63.3%
2036627 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.62 45.0 4.41e-01 87.9% 70.4%
4868829 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.62 53.0 4.36e-01 97.0% 80.6%
4928053 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 4.39e-01 97.0% 68.3%
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 3.85e-01 100.0% 54.4%
3513418 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 38.0 4.41e-01 95.5% 95.6%
3486144 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 41.0 2.67e-01 77.3% 18.7%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.56 47.0 3.84e-01 98.5% 85.6%
3697960 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.55 47.0 3.69e-01 98.5% 100.0%
3320903 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 50.0 4.34e-01 100.0% 83.0%
5065208 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 4.13e-01 92.4% 92.7%
3923769 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 49.0 4.59e-01 100.0% 83.7%
4172447 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.25e-01 100.0% 84.0%
3288169 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 43.0 4.08e-01 90.9% 86.3%
3740269 316.1.1.24 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm 0.51 40.0 2.90e-01 86.4% 49.7%
4003477 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 47.0 4.05e-01 100.0% 70.0%