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MN732896.1__QGZ15853.1__X__00018

Bact-Vir

MN732896.1__QGZ15853.1__X__00018

Identity

Accession:
MN732896 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Elizabethkingia_phage_TCUEAP1

TaxID: 2686291

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-133_213-227_368-393
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.54 24.0 2.92e-01 70.4% 61.7%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.52 33.0 3.76e-01 81.7% 86.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3574661 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 18.0 2.96e-01 71.1% 75.6%
1222168 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.56 18.0 2.98e-01 71.1% 81.4%
3396736 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.52 22.0 3.01e-01 87.3% 78.5%
D2 medium residues 134-212
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.62 32.0 3.70e-01 72.2% 69.1%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 31.0 2.72e-01 100.0% 33.1%
3vpzA02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.56 43.0 3.24e-01 84.8% 44.5%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.54 43.0 3.19e-01 86.1% 43.0%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 29.0 2.98e-01 97.5% 49.4%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.13e-01 70.9% 78.2%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.68e-01 92.4% 94.0%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 37.0 3.11e-01 74.7% 45.4%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 44.0 3.86e-01 98.7% 89.4%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 26.0 3.13e-01 92.4% 83.3%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 2.99e-01 91.1% 97.0%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 39.0 3.14e-01 84.8% 53.6%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.50 38.0 3.84e-01 88.6% 82.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3204334 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.59 28.0 3.40e-01 94.9% 68.0%
3748951 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 38.0 2.21e-01 78.5% 8.1%
4610038 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.55 39.0 2.83e-01 74.7% 54.0%
3178286 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 47.0 3.00e-01 100.0% 18.8%
5011625 2008.1.1.57 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VirArc_Nuclease 0.54 44.0 3.38e-01 92.4% 74.4%
4012647 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 45.0 2.99e-01 100.0% 20.8%
3632113 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 38.0 3.40e-01 74.7% 59.1%
3694611 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 45.0 2.96e-01 100.0% 20.3%
3710350 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.52 45.0 3.03e-01 100.0% 25.1%
3592833 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.52 45.0 3.01e-01 100.0% 24.8%
3995489 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.51 43.0 2.82e-01 96.2% 20.0%
3194447 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 43.0 2.80e-01 100.0% 20.7%
3262962 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.51 35.0 2.92e-01 72.2% 50.7%
2391702 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.50 43.0 3.15e-01 98.7% 79.1%
D3 medium residues 251-315
PDB