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MN746332.1__QNH91703.1__SR18_gp052c__00052

Bact-Vir

MN746332.1__QNH91703.1__SR18_gp052c__00052

Identity

Accession:
MN746332 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caulobacter_phage_SR18

TaxID: 2759119

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-52
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g7wA00 2.40.30.280 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Vibrio phage CTXphi pIII, N-terminal N1 domain 0.74 66.0 5.10e-01 100.0% 52.0%
3ikwA02 3.10.540.20 Alpha Beta › Roll › duf1285 like fold › 0.67 48.0 4.17e-01 77.8% 50.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 3.19e-01 77.8% 28.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 41.0 3.49e-01 77.8% 37.8%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 39.0 2.58e-01 77.8% 13.8%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 3.51e-01 77.8% 45.0%
5yh4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 42.0 2.76e-01 73.3% 41.9%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.32e-01 100.0% 90.1%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.56 42.0 3.50e-01 82.2% 54.3%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.56 40.0 3.30e-01 77.8% 88.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.55e-01 100.0% 53.8%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 3.91e-01 100.0% 60.5%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.53 38.0 2.78e-01 77.8% 34.4%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.57e-01 100.0% 54.3%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 33.0 1.96e-01 77.8% 6.6%
2g7cB01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.52 44.0 3.98e-01 100.0% 77.3%
2qj6A01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.52 40.0 3.02e-01 97.8% 31.8%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 40.0 3.00e-01 93.3% 76.3%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 42.0 3.09e-01 100.0% 60.7%
1nlrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 40.0 2.61e-01 91.1% 27.0%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 35.0 2.79e-01 75.6% 72.9%
3bdwB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 40.0 3.17e-01 100.0% 83.6%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.51 36.0 2.45e-01 77.8% 23.3%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 41.0 3.16e-01 100.0% 52.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933890 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.70 39.0 2.96e-01 77.8% 24.0%
3936327 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.68 38.0 2.91e-01 77.8% 24.0%
4462199 102.1.1.99 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.68 48.0 3.06e-01 75.6% 23.2%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.37e-01 84.4% 66.7%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 4.00e-01 84.4% 54.5%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 39.0 3.61e-01 77.8% 43.3%
3909833 206.1.1.87 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, RIO1 0.65 45.0 2.71e-01 84.4% 10.8%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 3.02e-01 77.8% 28.9%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 41.0 3.88e-01 86.7% 56.4%
3504386 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.62 45.0 3.88e-01 95.6% 50.0%
None — 0.62 49.0 2.87e-01 100.0% 12.8%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 40.0 3.78e-01 84.4% 54.5%
3519410 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.60 43.0 4.61e-01 95.6% 89.7%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 37.0 3.85e-01 80.0% 67.5%
3534694 4050.1.1.2 ↗ few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F-actin_cap_A 0.58 36.0 3.62e-01 75.6% 60.0%
4030539 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.58 35.0 2.13e-01 77.8% 7.8%
3680162 375.1.1.148 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C 0.57 32.0 3.56e-01 75.6% 71.4%
3238744 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 34.0 2.57e-01 80.0% 21.9%
4488182 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 34.0 3.59e-01 71.1% 50.0%
3628910 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.56 46.0 3.75e-01 95.6% 87.6%
5008657 2003.2.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.55 33.0 2.13e-01 77.8% 10.4%
1142005 1.1.7.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Rep_1B 0.53 38.0 3.64e-01 97.8% 64.2%
4890901 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 40.0 2.79e-01 88.9% 32.6%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.52 42.0 3.88e-01 88.9% 78.3%
3980538 2.7.1.1 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.52 33.0 2.90e-01 77.8% 36.0%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.52 42.0 4.14e-01 93.3% 84.0%
5063118 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.51 38.0 2.36e-01 93.3% 92.5%
4827332 109.4.1.41 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Lipoprotein_11 0.51 40.0 3.02e-01 100.0% 98.0%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.12e-01 100.0% 41.1%
3516620 101.1.9.107 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867 0.51 40.0 3.35e-01 100.0% 68.4%