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MN794238.1__QHJ74577.1__VH22019_00013__00013
Bact-VirMN794238.1__QHJ74577.1__VH22019_00013__00013
Identity
- Accession:
- MN794238 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-89_209-252
Domain cluster:
rep: OP009281.1__UUV44455.1__RCMENCHIE_86__00086__D71-177_328-350
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u60A02 | 1.20.272.50 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › Bacteriophage clamp loader A subunit, A' domain | 0.71 | 40.0 | 5.03e-01 | 98.5% | 94.9% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.68 | 35.0 | 4.52e-01 | 75.2% | 87.8% |
| 4lixA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 50.0 | 4.20e-01 | 87.2% | 88.1% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.62 | 39.0 | 4.43e-01 | 79.7% | 83.2% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 32.0 | 4.31e-01 | 70.7% | 100.0% |
| 3ljcA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 35.0 | 3.63e-01 | 75.9% | 65.9% |
| 2wwxB00 | 1.20.1260.70 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.55 | 41.0 | 3.61e-01 | 78.9% | 67.5% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.54 | 38.0 | 3.90e-01 | 72.9% | 90.4% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 37.0 | 3.84e-01 | 100.0% | 77.9% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 43.0 | 3.45e-01 | 88.7% | 94.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3256810 | 109.46.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › TPR1-like_2nd | 0.66 | 37.0 | 3.97e-01 | 94.0% | 63.5% |
| 5008560 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.63 | 38.0 | 4.30e-01 | 76.7% | 76.2% |
| 4999823 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.60 | 34.0 | 4.29e-01 | 74.4% | 92.5% |
| 5044963 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 41.0 | 4.06e-01 | 71.4% | 89.3% |
| 3279151 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.57 | 34.0 | 4.05e-01 | 72.2% | 86.7% |
| 5040767 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.55 | 35.0 | 4.16e-01 | 72.2% | 100.0% |
| 3192066 | 109.4.1.1527 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec39 | 0.53 | 38.0 | 2.76e-01 | 97.0% | 24.6% |
| 3741893 | 109.4.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 | 0.53 | 34.0 | 3.58e-01 | 98.5% | 71.7% |
D2
medium
residues 91-198
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qw6D00 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.81 | 57.0 | 6.32e-01 | 73.1% | 94.2% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.66 | 47.0 | 5.10e-01 | 75.0% | 94.5% |
| 3dxqB02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.59 | 47.0 | 3.85e-01 | 86.1% | 94.8% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 39.0 | 3.67e-01 | 75.0% | 81.1% |
| 1nf1A02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.54 | 41.0 | 3.56e-01 | 81.5% | 98.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3995784 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.62 | 41.0 | 3.85e-01 | 71.3% | 54.6% |
| 3236199 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 41.0 | 4.16e-01 | 70.4% | 66.4% |
| 4021674 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.55 | 41.0 | 3.03e-01 | 80.6% | 34.3% |
| 3205307 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.53 | 36.0 | 3.02e-01 | 72.2% | 38.5% |
| 5011440 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.53 | 43.0 | 3.28e-01 | 89.8% | 72.9% |
| 3505657 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.52 | 40.0 | 4.19e-01 | 82.4% | 94.0% |