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MN794238.1__QHJ74599.1__VH22019_00035__00035

Bact-Vir

MN794238.1__QHJ74599.1__VH22019_00035__00035

Identity

Accession:
MN794238 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-81
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 4.82e-01 100.0% 66.7%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.68 57.0 4.32e-01 100.0% 71.1%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.68 52.0 4.91e-01 87.0% 98.3%
2b25A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.67 52.0 4.85e-01 84.8% 96.5%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.67 55.0 3.69e-01 95.7% 56.8%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.66 54.0 4.33e-01 97.8% 92.2%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.66 54.0 4.19e-01 100.0% 82.2%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.66 55.0 4.29e-01 100.0% 84.4%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.65 55.0 4.36e-01 95.7% 100.0%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.65 53.0 3.67e-01 95.7% 50.0%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.64 52.0 3.27e-01 93.5% 79.0%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 54.0 4.95e-01 100.0% 92.3%
1sefA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 51.0 3.76e-01 91.3% 56.5%
1xdpA02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.64 47.0 3.13e-01 82.6% 69.3%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.64 54.0 4.16e-01 100.0% 71.2%
2wcyA02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 50.0 4.25e-01 91.3% 86.3%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.63 51.0 3.84e-01 93.5% 94.9%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 52.0 4.20e-01 95.7% 71.7%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.63 50.0 3.49e-01 95.7% 49.7%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 44.0 3.81e-01 76.1% 50.7%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 53.0 3.87e-01 100.0% 39.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 3.40e-01 84.8% 46.1%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 53.0 3.23e-01 100.0% 16.8%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 48.0 4.09e-01 95.7% 87.2%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 51.0 4.21e-01 100.0% 73.6%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.60 49.0 3.74e-01 100.0% 68.8%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 50.0 4.07e-01 100.0% 99.0%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 43.0 3.10e-01 80.4% 34.8%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 42.0 3.38e-01 80.4% 38.5%
1rc6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 51.0 3.27e-01 100.0% 19.4%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.59 51.0 3.57e-01 100.0% 31.0%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 3.90e-01 95.7% 74.5%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 50.0 3.90e-01 100.0% 44.9%
4mv2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 48.0 3.65e-01 97.8% 65.0%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 50.0 3.97e-01 100.0% 65.3%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 4.07e-01 100.0% 89.7%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.91e-01 89.1% 89.0%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 46.0 4.46e-01 97.8% 94.5%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.28e-01 80.4% 71.0%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.53e-01 100.0% 36.7%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.34e-01 100.0% 52.9%
3tm8B00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 43.0 2.77e-01 100.0% 16.9%
2hc8A00 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.55 45.0 3.52e-01 100.0% 41.6%
4kx7A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.60e-01 91.3% 89.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.21e-01 91.3% 83.3%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.53 42.0 3.76e-01 95.7% 58.7%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.57e-01 100.0% 71.4%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.75e-01 95.7% 55.0%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.44e-01 97.8% 80.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4970868 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 54.0 3.91e-01 80.4% 44.8%
3607421 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.72 56.0 3.30e-01 87.0% 86.2%
5017308 4012.1.1.5 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › DUF515 0.70 57.0 5.30e-01 93.5% 85.0%
5048760 2498.1.1.6 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.69 51.0 2.89e-01 80.4% 7.7%
3604113 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.69 57.0 4.06e-01 95.7% 54.5%
5011401 1.1.4.1 beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.69 58.0 4.53e-01 100.0% 84.8%
4999893 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.69 52.0 3.95e-01 91.3% 34.2%
1172458 379.1.1.4 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_3 0.68 49.0 4.74e-01 78.3% 69.8%
5062171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 3.46e-01 78.3% 90.0%
3181438 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.68 47.0 3.02e-01 73.9% 98.2%
3470319 3223.1.1.0 beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 0.67 55.0 3.19e-01 95.7% 30.4%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.65 53.0 4.37e-01 91.3% 64.7%
4928815 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.96e-01 100.0% 83.1%
3663761 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 3.84e-01 84.8% 48.6%
3219441 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 50.0 4.17e-01 84.8% 92.5%
3219409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.10e-01 89.1% 88.9%
5057553 1.1.4.1 beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.64 54.0 4.44e-01 100.0% 96.7%
5012954 632.2.1.40 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.64 53.0 3.80e-01 95.7% 37.9%
3415385 11.2.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4788 0.63 42.0 3.09e-01 71.7% 100.0%
3947630 2484.1.1.56 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.63 50.0 2.94e-01 93.5% 12.6%
3812338 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 42.0 3.08e-01 71.7% 89.2%
4426469 221.1.4.0 a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like 0.62 50.0 4.19e-01 100.0% 80.0%
3705755 226.1.1.4 a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.61 51.0 3.74e-01 97.8% 61.5%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.63e-01 100.0% 78.6%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.61 50.0 4.29e-01 95.7% 74.4%
5026232 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 46.0 3.95e-01 87.0% 52.5%
5025771 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 3.95e-01 95.7% 83.2%
4622524 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.60 48.0 3.03e-01 93.5% 20.0%
4579534 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.60 39.0 3.51e-01 97.8% 46.2%
3833034 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.60 47.0 2.73e-01 89.1% 14.3%
3230520 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 52.0 4.21e-01 100.0% 62.2%
4952899 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 48.0 4.21e-01 100.0% 91.3%
4252940 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.59 38.0 3.43e-01 95.7% 44.6%
3319860 109.4.1.2173 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif 0.59 41.0 2.52e-01 73.9% 29.2%
3316151 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.59 46.0 2.98e-01 89.1% 26.1%
5026233 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 45.0 3.94e-01 87.0% 54.7%
3662072 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 3.77e-01 100.0% 46.7%
3265036 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 47.0 4.04e-01 100.0% 88.2%
5034720 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 3.78e-01 95.7% 80.0%
3430270 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.58 42.0 3.73e-01 82.6% 93.3%
3776602 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.58 45.0 2.85e-01 89.1% 95.8%
5038391 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.58 48.0 3.23e-01 100.0% 28.6%
3978877 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 48.0 4.00e-01 100.0% 78.9%
3326132 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.52e-01 100.0% 83.1%
3682973 109.4.1.2641 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, DYW_deaminase, Eplus_motif 0.57 39.0 2.42e-01 73.9% 28.1%
4030703 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.56 42.0 3.43e-01 89.1% 60.0%
5020144 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.53e-01 97.8% 80.0%
5023508 275.1.1.5 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.54 43.0 3.75e-01 100.0% 82.4%
3829044 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.54 37.0 2.35e-01 73.9% 17.6%
3721062 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.53 43.0 3.73e-01 100.0% 95.3%
3609901 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 39.0 2.86e-01 89.1% 65.0%
3723736 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.31e-01 100.0% 72.2%
3335541 109.4.1.2173 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif 0.52 42.0 2.53e-01 93.5% 84.3%
3322777 109.4.1.1738 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.52 44.0 2.61e-01 100.0% 75.4%
4015021 221.1.3.0 a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.51 36.0 2.31e-01 78.3% 57.1%
3808573 109.4.1.3485 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, DYW_deaminase, Eplus_motif, E_motif 0.51 42.0 2.51e-01 100.0% 68.0%