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MN812206.1__QHB38624.1__filifjonk91_gp007__00007

Bact-Vir

MN812206.1__QHB38624.1__filifjonk91_gp007__00007

Identity

Accession:
MN812206 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-79
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 42.0 3.97e-01 92.0% 49.2%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.67 57.0 3.66e-01 98.0% 42.8%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.65 37.0 4.23e-01 84.0% 74.3%
1qe5A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.64 44.0 2.75e-01 94.0% 13.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 39.0 3.07e-01 94.0% 28.8%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 54.0 4.01e-01 100.0% 59.3%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 47.0 3.94e-01 96.0% 47.2%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.61 45.0 3.15e-01 84.0% 60.1%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.61 50.0 2.94e-01 92.0% 83.8%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 41.0 3.11e-01 92.0% 29.2%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.58 40.0 2.59e-01 74.0% 66.5%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.57 46.0 3.08e-01 94.0% 31.9%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.57 38.0 2.46e-01 70.0% 66.4%
2vr3B02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 3.48e-01 100.0% 81.9%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 36.0 2.17e-01 94.0% 8.3%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.11e-01 94.0% 25.3%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 3.94e-01 98.0% 82.6%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.08e-01 76.0% 58.3%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 4.31e-01 100.0% 80.0%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.54 44.0 3.50e-01 94.0% 79.5%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 44.0 2.70e-01 100.0% 14.4%
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.54 42.0 3.98e-01 92.0% 98.5%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 32.0 2.80e-01 100.0% 32.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 42.0 3.19e-01 92.0% 86.9%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.43e-01 100.0% 42.3%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.38e-01 100.0% 65.1%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.03e-01 92.0% 39.3%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.53 43.0 3.68e-01 92.0% 79.8%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.52 30.0 3.30e-01 88.0% 62.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 45.0 3.80e-01 100.0% 68.6%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 42.0 3.37e-01 98.0% 79.3%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 42.0 2.77e-01 100.0% 21.1%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 2.48e-01 72.0% 44.7%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 34.0 2.51e-01 88.0% 21.8%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 39.0 2.81e-01 100.0% 77.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3917310 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.76 54.0 4.99e-01 92.0% 58.5%
4972474 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 47.0 2.60e-01 92.0% 4.6%
4649118 2484.1.1.197 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.76 52.0 3.04e-01 92.0% 9.1%
3975472 1104.1.1.1 a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 0.74 47.0 3.28e-01 96.0% 20.6%
3269700 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.73 51.0 3.17e-01 98.0% 12.9%
3705696 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.68 54.0 3.47e-01 92.0% 19.1%
4996027 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.67 53.0 3.40e-01 90.0% 92.7%
3482406 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.67 42.0 4.62e-01 92.0% 91.4%
4299507 3256.1.1.2 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g 0.66 40.0 4.48e-01 92.0% 85.7%
3712198 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 46.0 2.73e-01 76.0% 30.5%
3734205 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.66 48.0 3.25e-01 78.0% 93.3%
3742995 304.9.1.165 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › eIF3g 0.65 41.0 4.46e-01 92.0% 88.6%
3449382 3256.1.1.2 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g 0.64 40.0 4.49e-01 92.0% 91.4%
3565241 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 46.0 2.70e-01 94.0% 9.9%
4034091 4325.1.1.7 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.63 41.0 4.13e-01 92.0% 66.0%
3244742 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 45.0 2.83e-01 92.0% 13.4%
3166912 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 51.0 3.47e-01 92.0% 28.4%
4947615 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.63 42.0 3.95e-01 92.0% 53.8%
1106745 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 39.0 4.03e-01 92.0% 67.4%
3722378 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 49.0 4.11e-01 92.0% 95.5%
3612106 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 39.0 3.54e-01 94.0% 44.0%
3932882 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.60 48.0 4.27e-01 94.0% 96.2%
3586673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.54e-01 98.0% 10.0%
4028518 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.60 51.0 3.74e-01 100.0% 35.6%
3519727 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 36.0 3.91e-01 92.0% 75.0%
3728231 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 42.0 2.67e-01 76.0% 58.5%
3662203 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.59 47.0 3.98e-01 92.0% 52.9%
3531933 3121.1.1.11 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › PF27961 0.57 38.0 3.32e-01 94.0% 42.2%
3268814 298.1.1.15 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.57 46.0 2.92e-01 90.0% 98.4%
4023558 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.57 50.0 3.00e-01 100.0% 32.2%
5060239 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.56 40.0 2.62e-01 80.0% 43.8%
4590247 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.56 49.0 4.20e-01 100.0% 65.0%
3355880 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.56 45.0 2.72e-01 100.0% 12.9%
3896126 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.56 50.0 3.95e-01 100.0% 82.0%
4969691 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.55 45.0 2.91e-01 92.0% 92.7%
3468988 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.55 43.0 3.03e-01 94.0% 47.7%
3697945 4.1.1.312 beta barrels › SH3 › SH3 › SH3 › Med13_N 0.55 44.0 3.01e-01 94.0% 25.9%
3425464 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.55 46.0 2.82e-01 100.0% 89.4%
3573769 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 3.37e-01 100.0% 43.8%
3715799 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 49.0 2.77e-01 100.0% 20.4%
3970435 101.1.2.379 alpha arrays › HTH › HTH › winged helix domain › NGO1945_C 0.55 42.0 3.29e-01 92.0% 37.0%
4452393 304.112.1.10 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N 0.55 46.0 3.65e-01 96.0% 46.7%
4141464 4099.1.1.22 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.54 41.0 3.20e-01 98.0% 38.2%
3708741 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 2.73e-01 100.0% 31.1%
3733008 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.54 45.0 2.80e-01 96.0% 15.0%
3593375 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 38.0 3.64e-01 90.0% 65.0%
3718996 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 47.0 2.69e-01 100.0% 24.5%
3592307 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 38.0 2.63e-01 78.0% 65.7%
4122334 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.53 45.0 3.31e-01 98.0% 73.6%
1721555 11.1.4.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.53 43.0 3.36e-01 98.0% 64.2%
4449325 387.1.1.24 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_35 0.53 34.0 3.57e-01 82.0% 73.3%
3797631 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.53 40.0 2.71e-01 92.0% 80.2%
3724001 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 42.0 3.12e-01 92.0% 34.6%
3623409 11.1.5.6 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box 0.52 41.0 2.93e-01 98.0% 59.5%
3475221 5.1.5.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_VPS8, Beta-prop_WDR3_2nd 0.52 37.0 2.31e-01 78.0% 25.2%
3717426 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 43.0 2.59e-01 100.0% 12.3%
4245831 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.52 44.0 3.24e-01 98.0% 73.6%
3797440 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 41.0 2.91e-01 98.0% 59.0%
3906596 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 2.97e-01 100.0% 52.4%
3721917 101.36.1.0 alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain 0.51 41.0 3.86e-01 94.0% 96.9%
4978710 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.51 39.0 3.40e-01 90.0% 88.2%