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MN812211.1__QHB38997.1__laban61_gp026__00026

Bact-Vir

MN812211.1__QHB38997.1__laban61_gp026__00026

Identity

Accession:
MN812211 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Duneviridae› Labanvirus› Flavobacterium_phage_vB_FspS_laban6-1

TaxID: 2686250

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 59.0 4.23e-01 92.0% 33.3%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 52.0 3.76e-01 82.0% 29.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052893 102.3.1.0 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.73 64.0 5.27e-01 98.0% 80.0%
3640423 304.48.1.21 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C 0.72 59.0 3.77e-01 94.0% 21.2%
D2 medium residues 51-85_98-115
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.61 41.0 3.75e-01 71.7% 96.0%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.55 41.0 2.48e-01 88.7% 21.5%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 39.0 2.80e-01 100.0% 23.9%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.53 41.0 3.46e-01 94.3% 73.1%
5gjnA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.52 42.0 3.24e-01 100.0% 66.2%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 36.0 3.29e-01 77.4% 85.7%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 2.66e-01 92.5% 91.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3612863 3609.1.1.3 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 0.91 70.0 4.49e-01 98.1% 20.2%
4536357 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.90 68.0 4.32e-01 98.1% 18.7%
3943422 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.90 70.0 7.62e-01 92.5% 100.0%
3947849 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.84 75.0 6.23e-01 98.1% 69.7%
4961902 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.83 76.0 5.75e-01 100.0% 45.2%
3628296 3609.1.1.2 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › BHD_2 0.81 72.0 7.16e-01 96.2% 98.2%
3867991 3609.1.1.2 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › BHD_2 0.80 70.0 6.73e-01 96.2% 98.3%
3591118 3609.1.1.0 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.79 68.0 7.00e-01 98.1% 100.0%
3591467 3609.1.1.0 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.78 55.0 6.08e-01 94.3% 100.0%
3784588 3609.1.1.2 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › BHD_2 0.78 66.0 6.31e-01 92.5% 100.0%
3176227 3609.1.1.0 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.77 68.0 6.75e-01 98.1% 100.0%
3727938 3609.1.1.2 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › BHD_2 0.76 65.0 6.23e-01 92.5% 100.0%
3727940 3609.1.1.2 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › BHD_2 0.74 65.0 6.09e-01 98.1% 96.9%
5005850 872.2.1.0 ↗ a+b two layers › Dodecin subunit-like › Amyloid beta a4 protein copper binding domain (domain 2) › Amyloid beta a4 protein copper binding domain (domain 2) 0.62 45.0 4.75e-01 96.2% 95.6%
4030175 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 46.0 2.90e-01 100.0% 36.6%
5012279 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.55 47.0 3.61e-01 100.0% 74.1%
3653356 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 40.0 2.50e-01 88.7% 22.5%
3220363 3447.1.1.1 ↗ alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24 0.52 39.0 2.65e-01 83.0% 51.0%
3385958 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.51 40.0 3.78e-01 94.3% 80.0%