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MN812211.1__QHB39021.1__laban61_gp050__00050
Bact-VirMN812211.1__QHB39021.1__laban61_gp050__00050
Identity
- Accession:
- MN812211 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Duneviridae›
Labanvirus›
Flavobacterium_phage_vB_FspS_laban6-1
TaxID: 2686250
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-74
Domain cluster:
rep: MT732473.1__QQV91392.1__Leef1_28__00028__D5-76
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 43.0 | 4.54e-01 | 87.5% | 93.8% |
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.55 | 36.0 | 3.46e-01 | 86.1% | 54.4% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 4.07e-01 | 83.3% | 82.4% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 39.0 | 3.47e-01 | 88.9% | 52.8% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 4.37e-01 | 81.9% | 100.0% |
| 6tfjA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 38.0 | 3.31e-01 | 76.4% | 71.3% |
| 4lizA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 42.0 | 3.49e-01 | 88.9% | 84.8% |
| 4p0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.39e-01 | 79.2% | 51.3% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.53 | 43.0 | 3.11e-01 | 94.4% | 71.6% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.52 | 39.0 | 4.01e-01 | 81.9% | 89.4% |
| 5h7jA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 37.0 | 3.30e-01 | 93.1% | 52.8% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.50 | 39.0 | 3.90e-01 | 84.7% | 84.7% |
| 2fhzA00 | 3.30.190.30 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › | 0.50 | 40.0 | 3.61e-01 | 91.7% | 75.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4562263 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.58 | 48.0 | 3.27e-01 | 97.2% | 36.5% |
| 3214839 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.55 | 44.0 | 3.65e-01 | 100.0% | 89.4% |
| 4979453 | 11.1.1.237 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 | 0.54 | 40.0 | 3.77e-01 | 79.2% | 66.7% |
| 4981389 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 37.0 | 3.57e-01 | 79.2% | 61.2% |
| 5079196 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.54 | 45.0 | 3.26e-01 | 97.2% | 32.1% |
| 5067739 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.60e-01 | 79.2% | 63.5% |
| 4942476 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.53 | 36.0 | 3.50e-01 | 77.8% | 63.7% |
| 4960808 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.53 | 39.0 | 3.72e-01 | 79.2% | 68.2% |
| 5067734 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 37.0 | 3.62e-01 | 79.2% | 67.5% |
| 3705019 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 44.0 | 3.66e-01 | 95.8% | 98.5% |
| 3501051 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.53 | 42.0 | 3.73e-01 | 93.1% | 74.8% |
| 3693414 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.53 | 44.0 | 3.05e-01 | 97.2% | 26.3% |
| 4453940 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 40.0 | 3.79e-01 | 81.9% | 98.8% |
| 3970586 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.52 | 41.0 | 3.29e-01 | 93.1% | 95.3% |
| 4948579 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.50e-01 | 79.2% | 62.1% |
| 5077839 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.24e-01 | 76.4% | 51.8% |
| 3223818 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.52 | 28.0 | 2.92e-01 | 70.8% | 55.7% |
| 4932628 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.51 | 39.0 | 3.29e-01 | 95.8% | 48.0% |
| 5052985 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.60e-01 | 84.7% | 87.0% |
| 4013727 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 42.0 | 2.74e-01 | 94.4% | 63.8% |
| 3397526 | 11.1.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 | 0.51 | 37.0 | 3.36e-01 | 77.8% | 86.0% |
| 4981612 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 36.0 | 3.44e-01 | 79.2% | 63.5% |
| 3566162 | 11.1.1.375 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,MG2,A2M_BRD | 0.51 | 39.0 | 2.32e-01 | 84.7% | 14.1% |
| 3621110 | 11.1.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 | 0.51 | 39.0 | 3.58e-01 | 86.1% | 86.0% |
| 5041319 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.51 | 40.0 | 3.79e-01 | 88.9% | 88.9% |
| 2323826 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.50 | 38.0 | 3.73e-01 | 84.7% | 97.4% |
D2
high
residues 88-143
Domain cluster:
rep: MT732473.1__QQV91392.1__Leef1_28__00028__D90-145
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 43.0 | 3.04e-01 | 80.4% | 77.4% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 47.0 | 4.42e-01 | 96.4% | 76.8% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 43.0 | 3.45e-01 | 92.9% | 55.7% |
| 2g2nC00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.52 | 40.0 | 3.26e-01 | 85.7% | 66.1% |
| 6fwvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.48e-01 | 85.7% | 56.7% |
| 4yarA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 41.0 | 3.31e-01 | 100.0% | 42.3% |
| 2qv7A02 | 2.60.200.40 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.51 | 42.0 | 3.26e-01 | 100.0% | 81.2% |
| 2icuA00 | 3.90.1680.10 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like | 0.51 | 39.0 | 2.78e-01 | 89.3% | 53.3% |
| 4fkeA03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 3.61e-01 | 92.9% | 90.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008350 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 59.0 | 5.34e-01 | 98.2% | 87.5% |
| 3244285 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.56 | 45.0 | 4.18e-01 | 92.9% | 78.7% |
| 3933905 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 40.0 | 3.15e-01 | 89.3% | 75.7% |
| 5068994 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.51 | 39.0 | 3.49e-01 | 85.7% | 60.0% |
| 3511027 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 3.35e-01 | 100.0% | 81.5% |