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MN813685.1__QHB37243.1__SEA_GUDMIT_14__00014

Bact-Vir

MN813685.1__QHB37243.1__SEA_GUDMIT_14__00014

Identity

Accession:
MN813685 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-99
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24201.2 best DUF7426 83.6 2.00e-23 100.0% 75.2%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 35.0 4.36e-01 70.2% 88.7%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 35.0 4.01e-01 86.2% 70.1%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 35.0 3.80e-01 85.1% 67.1%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 34.0 3.87e-01 87.2% 72.1%
3kluA01 3.30.2220.30 Alpha Beta › 2-Layer Sandwich › rbstp2171 › 0.61 49.0 4.71e-01 88.3% 95.5%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 33.0 4.15e-01 84.0% 100.0%
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.61 51.0 5.13e-01 93.6% 93.8%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 31.0 3.54e-01 70.2% 64.3%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 33.0 4.20e-01 80.9% 98.1%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.57 37.0 3.63e-01 88.3% 59.8%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.55 44.0 4.31e-01 88.3% 88.8%
4alzA01 3.30.1340.30 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 0.55 32.0 3.79e-01 87.2% 87.1%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.54 25.0 3.24e-01 80.9% 78.4%
2cufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 34.0 3.72e-01 84.0% 87.5%
7e5aB02 1.20.1000.10 Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain 0.51 36.0 3.12e-01 75.5% 48.2%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 34.0 2.46e-01 70.2% 33.2%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4537543 3103.1.1.4 alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_9 0.72 60.0 5.43e-01 89.4% 95.2%
3847051 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 38.0 3.99e-01 90.4% 61.2%
4620690 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 34.0 4.35e-01 85.1% 100.0%
3182935 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 36.0 4.05e-01 90.4% 70.0%
3523991 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 38.0 4.25e-01 90.4% 75.7%
4201481 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 34.0 4.11e-01 84.0% 78.3%
3454275 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 34.0 4.26e-01 84.0% 92.0%
3270649 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 36.0 4.32e-01 90.4% 85.0%
3800771 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 35.0 3.77e-01 87.2% 60.0%
3217489 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 34.0 4.24e-01 85.1% 94.0%
3301164 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 37.0 4.35e-01 89.4% 88.3%
3886591 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 36.0 3.87e-01 90.4% 63.7%
3299231 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 36.0 4.19e-01 90.4% 85.0%
3246596 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 36.0 3.92e-01 90.4% 68.0%
3398554 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 36.0 3.42e-01 90.4% 45.2%
3484360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 36.0 4.03e-01 90.4% 74.3%
3392498 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 34.0 3.92e-01 86.2% 73.8%
3523514 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 36.0 4.16e-01 90.4% 81.5%
3799537 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 35.0 3.56e-01 87.2% 54.4%
None 0.62 36.0 4.09e-01 90.4% 80.0%
162325 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 33.0 3.60e-01 86.2% 58.7%
3475983 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 34.0 4.24e-01 87.2% 98.0%
3220096 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 34.0 3.70e-01 86.2% 64.0%
None 0.62 35.0 3.46e-01 90.4% 48.6%
3769368 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 35.0 3.85e-01 90.4% 68.0%
4954554 6050.1.1.0 a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.61 50.0 4.88e-01 89.4% 88.6%
3480451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 35.0 3.78e-01 90.4% 65.0%
3796365 101.1.1.421 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain, CUT 0.61 35.0 2.79e-01 90.4% 26.2%
3997838 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 35.0 4.02e-01 90.4% 80.0%
3792126 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 35.0 3.49e-01 90.4% 53.7%
3757972 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 37.0 3.70e-01 90.4% 59.6%
3845189 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 34.0 3.98e-01 85.1% 80.0%
None 0.60 35.0 3.77e-01 90.4% 66.3%
3936240 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 37.0 4.27e-01 79.8% 90.8%
3783785 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 37.0 4.11e-01 77.7% 81.4%
3359036 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 35.0 3.53e-01 90.4% 56.8%
3993019 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 33.0 3.91e-01 91.5% 83.3%
3894712 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 36.0 3.93e-01 75.5% 74.7%
3870535 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 34.0 4.01e-01 79.8% 83.1%
3487287 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 38.0 4.28e-01 81.9% 93.8%
3318958 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 36.0 3.78e-01 78.7% 70.0%
3477895 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 35.0 3.77e-01 93.6% 72.0%
3582723 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 34.0 3.93e-01 80.9% 78.6%
4000902 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 36.0 3.94e-01 81.9% 77.3%
3528634 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.58 35.0 3.70e-01 90.4% 65.9%
3874841 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 36.0 4.12e-01 78.7% 89.2%
3842636 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 34.0 3.87e-01 83.0% 78.6%
4275568 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 35.0 3.94e-01 84.0% 80.0%
3751844 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 36.0 3.65e-01 81.9% 61.1%
4255549 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 35.0 3.94e-01 75.5% 84.6%
3790416 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 36.0 3.91e-01 81.9% 77.3%
3401846 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 33.0 3.35e-01 85.1% 54.4%
3391180 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 36.0 3.47e-01 81.9% 52.7%
3243458 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 36.0 4.00e-01 76.6% 82.9%
3484058 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 36.0 3.77e-01 79.8% 68.2%
4282585 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 37.0 3.90e-01 86.2% 71.8%
3529609 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 33.0 3.70e-01 81.9% 72.0%
3470506 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 34.0 3.97e-01 80.9% 84.6%
3890041 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 36.0 3.43e-01 80.9% 52.7%
4566385 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 34.0 3.93e-01 80.9% 84.6%
3478184 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 35.0 3.49e-01 79.8% 57.0%
3513561 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.57 38.0 4.31e-01 87.2% 92.9%
3572003 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.56 37.0 3.47e-01 83.0% 52.5%
3991598 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.56 35.0 3.70e-01 83.0% 71.2%
3523992 101.1.1.55 alpha arrays › HTH › HTH › Three-helical HTH › Homez 0.55 34.0 3.82e-01 73.4% 82.9%
3844546 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.54 35.0 3.96e-01 87.2% 87.1%
3579029 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.54 38.0 4.06e-01 80.9% 87.2%
3818566 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.54 38.0 3.94e-01 89.4% 77.8%
3873950 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.53 37.0 3.71e-01 90.4% 69.0%
3889817 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.53 35.0 3.73e-01 78.7% 78.8%
3894143 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.51 35.0 3.79e-01 81.9% 85.0%
D2 high residues 167-241
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o5iN05 1.10.40.90 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.64 43.0 4.91e-01 77.3% 100.0%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.64 36.0 4.29e-01 100.0% 91.1%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.64 32.0 3.44e-01 98.7% 55.2%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 38.0 4.19e-01 97.3% 73.8%
3zh9B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 33.0 3.47e-01 98.7% 57.1%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.56 46.0 3.58e-01 96.0% 72.1%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.54 42.0 3.88e-01 88.0% 96.1%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 43.0 3.11e-01 94.7% 74.4%
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.53 38.0 3.73e-01 84.0% 70.0%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.53 38.0 3.74e-01 76.0% 92.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.53 32.0 3.53e-01 92.0% 77.6%
3mqmA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 38.0 3.30e-01 78.7% 67.5%
3bxjA02 1.10.506.20 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › 0.52 38.0 3.59e-01 80.0% 76.5%
3mopK00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 40.0 3.83e-01 86.7% 100.0%
4qbuA02 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.52 41.0 2.98e-01 92.0% 35.3%
1wdcC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 36.0 3.60e-01 74.7% 94.9%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.51 38.0 2.93e-01 82.7% 97.4%
5k8pD01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 42.0 2.89e-01 96.0% 49.3%
1wh4A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.50 40.0 3.77e-01 90.7% 90.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4465167 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.62 42.0 3.73e-01 73.3% 48.2%
2849648 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.56 45.0 3.20e-01 88.0% 47.3%
3663702 143.1.1.5 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › VIN3_C 0.56 38.0 3.93e-01 80.0% 75.7%
4053119 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.55 41.0 3.53e-01 80.0% 74.2%
4510097 518.1.1.1 alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.54 38.0 3.87e-01 92.0% 74.7%
3730095 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.54 38.0 3.62e-01 76.0% 72.6%
4078112 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.54 41.0 4.09e-01 81.3% 100.0%
4999933 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.54 43.0 3.18e-01 89.3% 53.8%
4539173 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.53 43.0 3.14e-01 89.3% 53.2%
3690657 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.53 32.0 2.61e-01 100.0% 32.9%
5029931 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 31.0 3.25e-01 72.0% 62.9%
3207317 192.7.1.23 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › zf-C4pol 0.52 34.0 3.09e-01 81.3% 50.0%
3276002 2003.4.1.0 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes 0.52 41.0 3.09e-01 100.0% 35.6%
3728531 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.52 42.0 3.79e-01 92.0% 79.1%
3693575 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.52 34.0 3.38e-01 97.3% 62.5%
4933518 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.51 38.0 2.70e-01 84.0% 91.5%
3404343 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.51 39.0 3.75e-01 86.7% 75.6%
4270265 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.50 36.0 3.35e-01 76.0% 59.0%
D3 medium residues 106-163
PDB
Domain cluster: representative