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MN813685.1__QHB37287.1__SEA_GUDMIT_59__00059

Bact-Vir

MN813685.1__QHB37287.1__SEA_GUDMIT_59__00059

Identity

Accession:
MN813685 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 181-248
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.74 52.0 4.63e-01 73.5% 94.8%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 57.0 4.85e-01 85.3% 67.5%
1ufzA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 50.0 5.32e-01 79.4% 89.7%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.69 48.0 5.15e-01 75.0% 93.2%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.68 59.0 5.66e-01 100.0% 88.5%
2qgaB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.65 46.0 3.90e-01 75.0% 66.7%
5f7vA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 46.0 2.86e-01 75.0% 57.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 44.0 3.88e-01 72.1% 50.5%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 54.0 5.03e-01 100.0% 94.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 41.0 4.16e-01 72.1% 67.2%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.63 45.0 4.19e-01 76.5% 72.4%
1eu8A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 44.0 3.16e-01 75.0% 72.4%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.63 45.0 4.34e-01 79.4% 98.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.62 45.0 4.37e-01 77.9% 96.1%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 42.0 4.52e-01 72.1% 96.4%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 44.0 4.73e-01 76.5% 92.9%
2x49A03 1.10.8.540 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 0.60 51.0 4.74e-01 100.0% 88.9%
2zyoA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 42.0 3.08e-01 75.0% 74.1%
2p14A00 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.58 43.0 3.20e-01 79.4% 86.0%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.58 46.0 3.82e-01 95.6% 47.6%
1qgtB00 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.57 48.0 3.81e-01 95.6% 97.9%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 39.0 3.77e-01 75.0% 72.3%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.56 38.0 3.34e-01 70.6% 96.2%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.56 43.0 3.80e-01 94.1% 57.7%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 38.0 3.67e-01 72.1% 75.9%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.54 38.0 3.73e-01 76.5% 76.6%
5t3wA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 37.0 2.95e-01 70.6% 40.9%
3ty5A01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 44.0 2.95e-01 100.0% 35.2%
1ysyA00 1.10.8.370 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase 0.52 45.0 4.21e-01 98.5% 84.7%
1miwA03 1.20.58.560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 3.78e-01 95.6% 61.0%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.52 37.0 2.82e-01 79.4% 74.6%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 36.0 2.96e-01 75.0% 63.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067099 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.77 59.0 4.68e-01 82.4% 48.9%
3486206 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 63.0 6.14e-01 97.1% 97.3%
3971575 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 58.0 5.40e-01 95.6% 88.9%
3690980 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.69 48.0 4.17e-01 73.5% 71.4%
4097350 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 54.0 5.55e-01 89.7% 92.3%
4939237 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.69 47.0 4.79e-01 72.1% 92.3%
147042 3254.1.1.1 alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.69 59.0 5.43e-01 100.0% 89.0%
3760775 103.4.1.2 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.68 53.0 4.90e-01 86.8% 92.2%
3594407 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 58.0 5.48e-01 98.5% 94.1%
3280816 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 57.0 5.56e-01 97.1% 94.7%
4584357 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.67 55.0 5.24e-01 92.6% 100.0%
5042712 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 48.0 4.25e-01 77.9% 66.7%
4652292 3254.1.1.1 alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.67 58.0 5.34e-01 100.0% 88.9%
4962137 5076.2.1.13 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 0.66 56.0 3.89e-01 100.0% 49.0%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 46.0 4.11e-01 75.0% 65.0%
3386466 3254.1.1.1 alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.65 56.0 5.17e-01 100.0% 88.9%
5064035 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.65 44.0 4.63e-01 72.1% 100.0%
4946843 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.65 45.0 4.64e-01 73.5% 86.2%
4079762 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 44.0 2.72e-01 72.1% 13.5%
3653550 3621.1.1.0 alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain 0.63 52.0 4.36e-01 92.6% 91.7%
3503403 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.63 45.0 4.60e-01 76.5% 80.0%
3704812 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 52.0 5.10e-01 95.6% 92.0%
2557383 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.62 45.0 3.80e-01 79.4% 63.4%
4428119 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.62 51.0 3.59e-01 92.6% 62.7%
2723630 3254.1.1.1 alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.62 53.0 4.90e-01 100.0% 88.9%
3714253 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.61 43.0 3.58e-01 75.0% 63.2%
3600974 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.60 44.0 3.74e-01 79.4% 65.0%
4975860 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 41.0 3.85e-01 72.1% 80.0%
3404678 109.3.1.147 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF4485 0.59 47.0 4.38e-01 91.2% 87.8%
5001331 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 49.0 4.13e-01 92.6% 91.3%
4927753 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.58 48.0 4.87e-01 94.1% 100.0%
3630496 3755.4.1.5 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Dynactin 0.55 44.0 3.44e-01 88.2% 71.3%
3519655 101.1.10.33 alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C 0.54 45.0 3.50e-01 94.1% 96.8%
3269970 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.54 40.0 3.59e-01 83.8% 72.4%
3738339 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.54 35.0 2.85e-01 75.0% 36.0%
3933727 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.52 36.0 3.58e-01 75.0% 71.4%
3164823 309.1.1.4 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.50 38.0 2.66e-01 80.9% 70.0%
D2 medium residues 1-111
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.57e-01 70.3% 91.3%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 5.49e-01 73.9% 98.0%
3jw4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 39.0 3.87e-01 70.3% 56.6%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.17e-01 74.8% 82.7%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 27.0 2.81e-01 73.0% 43.7%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.22e-01 73.0% 97.0%
2v6eA04 1.10.10.2040 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 40.0 4.32e-01 77.5% 92.5%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.37e-01 95.5% 97.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 4.04e-01 73.9% 87.0%
4992883 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 50.0 5.66e-01 75.7% 92.9%
3280861 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 4.70e-01 71.2% 64.2%
4016908 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 4.34e-01 71.2% 73.3%
3813813 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.69 47.0 5.08e-01 70.3% 87.4%
3342447 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 3.05e-01 82.9% 15.6%
3495187 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 3.87e-01 73.0% 79.5%
3442533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.65 48.0 4.70e-01 76.6% 98.3%
4940567 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.64 46.0 4.27e-01 74.8% 90.6%
5080018 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.64 44.0 4.74e-01 70.3% 87.8%
3339900 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.63 50.0 4.60e-01 82.9% 82.9%
3812553 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.63 49.0 4.48e-01 81.1% 96.4%
3380408 207.1.1.230 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › WHD_ROQ1 0.62 52.0 3.70e-01 89.2% 37.8%
3329707 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.62 49.0 4.07e-01 83.8% 68.4%
3279656 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.61 43.0 4.17e-01 72.1% 80.0%
4219640 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 3.26e-01 96.4% 70.2%
4993103 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 4.38e-01 78.4% 86.7%
5050370 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.55 40.0 3.28e-01 77.5% 40.0%
3943865 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.70e-01 73.9% 91.7%