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MN820898.1__QHB80504.1__MMDA13_gp71__00071

Bact-Vir

MN820898.1__QHB80504.1__MMDA13_gp71__00071

Identity

Accession:
MN820898 ↗
Kingdom:
phage

Quality

66.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Torvergatavirus› Sphingomonas_phage_vB_StuS_MMDA13

TaxID: 2686378

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-84
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.83 70.0 6.59e-01 93.7% 76.6%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.75 63.0 5.35e-01 88.6% 69.4%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.74 67.0 4.46e-01 98.7% 45.3%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.70 56.0 5.30e-01 87.3% 72.6%
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.68 56.0 5.31e-01 89.9% 78.5%
3i3fB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.60 49.0 4.20e-01 89.9% 62.5%
1pf5A00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.56 44.0 3.84e-01 89.9% 57.7%
2lc0A00 3.30.2320.60 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › FhaA, phosphopeptide-binding domain (DUF3662) 0.55 44.0 3.86e-01 93.7% 73.5%
1qu9A00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.55 44.0 3.84e-01 89.9% 61.4%
6vq6I01 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.54 45.0 4.10e-01 94.9% 68.5%
3dsaA01 3.40.1650.10 Alpha Beta › 3-Layer(aba) Sandwich › RbsD-like fold › RbsD-like domain 0.54 43.0 3.72e-01 89.9% 84.5%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.52 42.0 3.65e-01 89.9% 57.0%
3p12A01 3.40.1650.10 Alpha Beta › 3-Layer(aba) Sandwich › RbsD-like fold › RbsD-like domain 0.52 41.0 3.65e-01 89.9% 83.9%
1p1jA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 40.0 3.60e-01 88.6% 84.3%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 34.0 2.86e-01 72.2% 46.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
11367 2485.3.1.6 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 0.83 70.0 6.59e-01 93.7% 76.6%
2989363 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 72.0 4.70e-01 98.7% 45.1%
3965498 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.76 63.0 4.12e-01 89.9% 31.5%
4147958 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.72 49.0 4.43e-01 93.7% 51.9%
3949155 2485.3.1.11 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.72 62.0 4.27e-01 94.9% 34.3%
4306281 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.67 47.0 4.49e-01 91.1% 62.1%
4208534 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.65 46.0 4.06e-01 89.9% 50.4%
3967169 298.4.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.64 47.0 4.02e-01 89.9% 48.8%
4113623 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.63 42.0 3.25e-01 89.9% 30.0%
4932467 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.62 51.0 4.91e-01 88.6% 87.8%
4638799 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.61 44.0 3.79e-01 89.9% 47.2%
4526172 3464.1.1.1 ↗ extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › vATP-synt_E 0.61 41.0 3.17e-01 89.9% 29.7%
4125320 298.4.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.60 44.0 4.38e-01 89.9% 72.9%
5044279 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.59 48.0 4.02e-01 91.1% 51.9%
5024214 301.9.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain 0.59 48.0 4.68e-01 89.9% 88.9%
3587520 301.1.1.6 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › MRM3-like_sub_bind 0.58 44.0 4.11e-01 88.6% 65.0%
4122989 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.56 41.0 3.24e-01 94.9% 37.0%
4991208 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.53 43.0 4.40e-01 88.6% 93.3%
3730273 301.7.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.53 42.0 3.70e-01 89.9% 67.2%
5050526 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.52 42.0 4.24e-01 89.9% 92.3%
4263049 2485.1.1.44 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 0.51 35.0 3.32e-01 73.4% 65.0%
4342849 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 42.0 3.41e-01 100.0% 81.7%
D2 high residues 99-155
PDB