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MN820898.1__QHB80514.1__MMDA13_gp81__00081

Bact-Vir

MN820898.1__QHB80514.1__MMDA13_gp81__00081

Identity

Accession:
MN820898 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Torvergatavirus› Sphingomonas_phage_vB_StuS_MMDA13

TaxID: 2686378

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-127
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 4.20e-01 75.0% 100.0%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.54 30.0 3.66e-01 71.1% 100.0%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 44.0 2.95e-01 96.1% 79.8%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.97e-01 90.8% 87.9%
3kljA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 2.87e-01 73.7% 64.9%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.89e-01 90.8% 88.3%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 40.0 2.54e-01 88.2% 38.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968262 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 41.0 2.66e-01 73.7% 69.4%
4946779 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.57 41.0 2.62e-01 75.0% 68.5%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.57 38.0 4.06e-01 85.5% 80.0%
3637462 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 41.0 2.58e-01 86.8% 64.8%
1175040 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.52 35.0 3.88e-01 90.8% 88.3%
3700745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.87e-01 71.1% 100.0%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 33.0 3.48e-01 80.3% 74.3%