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MN830252.1__QHJ74741.1__X__00069

Bact-Vir

MN830252.1__QHJ74741.1__X__00069

Identity

Accession:
MN830252 ↗
Kingdom:
phage

Quality

96.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_JNU_P1

TaxID: 2686379

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-74
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02661.24 best Fic 38.4 2.60e-09 97.3% 87.1%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.60 47.0 4.53e-01 95.9% 76.2%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.59 47.0 4.29e-01 93.2% 65.7%
1mu5A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 41.0 4.05e-01 94.6% 71.8%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 41.0 3.40e-01 94.6% 44.8%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 38.0 3.31e-01 75.7% 79.7%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 41.0 3.34e-01 87.8% 56.8%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 42.0 4.12e-01 95.9% 83.5%
3cymA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.51 43.0 3.80e-01 98.6% 66.4%
1thgA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 2.61e-01 98.6% 33.3%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 43.0 3.40e-01 100.0% 62.6%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.51 41.0 3.55e-01 93.2% 62.9%
1aj5A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.21e-01 93.2% 69.4%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.50 40.0 3.82e-01 95.9% 74.2%
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.50 39.0 3.71e-01 90.5% 72.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588861 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.95 90.0 7.12e-01 100.0% 55.6%
5049550 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.94 88.0 7.18e-01 100.0% 58.4%
3291594 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.91 81.0 6.58e-01 100.0% 53.8%
3926812 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.59 47.0 4.83e-01 91.9% 97.1%
4883305 7061.1.1.1 ↗ few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 0.58 45.0 4.44e-01 98.6% 81.0%
5073522 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 48.0 4.61e-01 95.9% 82.4%
3313301 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.56 43.0 4.18e-01 87.8% 72.9%
4238496 148.1.3.23 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.56 48.0 4.35e-01 97.3% 93.3%
3538104 7061.1.1.1 ↗ few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 0.56 43.0 4.33e-01 98.6% 85.3%
3430133 102.2.1.2 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 0.55 39.0 3.37e-01 94.6% 47.8%
4969961 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.55 38.0 3.69e-01 73.0% 96.5%
4998021 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 42.0 4.25e-01 91.9% 84.0%
4015011 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.54 44.0 3.30e-01 94.6% 61.5%
3374779 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 41.0 3.80e-01 98.6% 61.0%
1199042 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.54 40.0 3.82e-01 87.8% 66.3%
5030544 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.53 34.0 3.35e-01 98.6% 58.7%
2141309 191.1.1.10 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6 0.52 43.0 3.83e-01 100.0% 87.4%
3718509 2004.1.1.71 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.52 42.0 2.84e-01 93.2% 90.3%
3285173 191.1.1.17 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13 0.52 44.0 3.83e-01 100.0% 77.6%
None — 0.52 39.0 3.34e-01 85.1% 47.7%
4009473 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.52 37.0 3.47e-01 77.0% 83.2%
None — 0.51 44.0 3.43e-01 100.0% 67.4%
5002768 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 36.0 3.41e-01 100.0% 60.0%
3981156 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 43.0 3.95e-01 98.6% 77.0%
3698452 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 42.0 3.25e-01 100.0% 54.4%
4465325 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 42.0 2.66e-01 95.9% 19.3%
3201288 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.50 43.0 3.27e-01 100.0% 60.3%
3888831 4015.1.1.0 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins 0.50 36.0 2.54e-01 81.1% 65.7%
D2 medium residues 75-131
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7pweA02 3.90.460.10 Alpha Beta › Alpha-Beta Complex › Ferredoxin Thioredoxin Reductase › Ferredoxin thioredoxin reductase catalytic beta subunit 0.73 63.0 5.22e-01 100.0% 78.7%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.68 50.0 4.88e-01 94.7% 72.6%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 51.0 5.25e-01 94.7% 88.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 3.73e-01 75.4% 96.1%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 48.0 4.95e-01 94.7% 92.5%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.61 55.0 4.29e-01 100.0% 48.7%
2ptqA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.61 47.0 3.00e-01 84.2% 34.2%
2qmaA01 1.20.1650.10 Mainly Alpha › Up-down Bundle › PLP-dependent transferase-like › PLP-dependent transferases 0.60 40.0 3.57e-01 70.2% 50.0%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 46.0 4.29e-01 96.5% 68.5%
4lqeA00 3.40.1350.140 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like 0.57 47.0 3.54e-01 96.5% 80.5%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.54 39.0 4.13e-01 89.5% 97.9%
3nr5A00 3.40.1000.50 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Repressor of RNA polymerase III transcription Maf1 0.54 44.0 3.23e-01 91.2% 52.2%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 45.0 3.47e-01 94.7% 58.1%
3d00A01 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.52 40.0 3.10e-01 93.0% 53.6%
6ay1A00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.51 41.0 3.21e-01 93.0% 83.3%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 37.0 3.00e-01 82.5% 72.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588861 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.93 86.0 6.34e-01 100.0% 43.0%
5004520 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.92 79.0 6.05e-01 96.5% 45.2%
5049550 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.91 77.0 5.81e-01 96.5% 41.6%
5004111 911.1.1.1 ↗ few secondary structure elements › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › FeThRed_B 0.73 61.0 5.44e-01 96.5% 97.6%
4494566 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.68 46.0 3.42e-01 70.2% 36.6%
3598 632.3.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyxo_P 0.67 51.0 5.25e-01 94.7% 88.7%
4045490 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.65 41.0 3.44e-01 96.5% 37.9%
3257606 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 53.0 5.24e-01 94.7% 88.3%
4135607 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.63 42.0 3.20e-01 70.2% 43.8%
3651783 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.62 52.0 4.45e-01 94.7% 74.5%
1768989 138.1.1.8 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Gp44_C 0.61 53.0 5.25e-01 100.0% 93.5%
4517001 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.61 45.0 4.76e-01 91.2% 94.0%
4239905 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.59 47.0 4.78e-01 96.5% 94.4%
1519214 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.58 43.0 3.67e-01 82.5% 62.7%
3821694 109.46.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH 0.52 43.0 2.73e-01 94.7% 39.1%
4957145 2006.1.3.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.52 40.0 3.00e-01 94.7% 94.4%
4238120 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.52 41.0 2.96e-01 98.2% 29.3%
3464534 101.1.2.641 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.51 42.0 2.42e-01 93.0% 17.8%