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MN830253.1__QHJ74772.1__X__00027

Bact-Vir

MN830253.1__QHJ74772.1__X__00027

Identity

Accession:
MN830253 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_JNU_P5

TaxID: 2686384

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 334-421
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 31.0 3.13e-01 95.5% 50.5%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 32.0 3.34e-01 94.3% 60.3%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 32.0 2.72e-01 96.6% 32.0%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.54 34.0 2.98e-01 95.5% 40.6%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 31.0 2.87e-01 96.6% 41.0%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 30.0 2.89e-01 95.5% 46.3%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 30.0 3.29e-01 95.5% 69.6%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 3.45e-01 94.3% 76.8%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 30.0 3.07e-01 97.7% 57.1%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 32.0 3.16e-01 95.5% 58.7%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 31.0 3.28e-01 94.3% 67.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950769 3987.1.1.0 ↗ a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain 0.94 90.0 8.40e-01 100.0% 86.7%
4241489 3987.1.1.0 ↗ a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain 0.93 87.0 7.91e-01 100.0% 78.2%
4260408 3987.1.1.0 ↗ a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain 0.77 53.0 5.38e-01 100.0% 72.9%
3714966 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 32.0 3.43e-01 95.5% 68.0%
3657579 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.54 33.0 3.55e-01 96.6% 74.3%
3165321 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.52 32.0 3.22e-01 94.3% 58.9%
3877696 101.1.2.164 ↗ alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.51 30.0 2.90e-01 97.7% 49.0%
4930710 304.106.1.0 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 0.51 41.0 2.87e-01 94.3% 89.9%
4008061 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 32.0 3.44e-01 95.5% 74.7%
D2 high residues 553-620
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.72 64.0 6.23e-01 98.5% 100.0%
3l2pA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.66 42.0 2.98e-01 92.6% 22.2%
5e9hB01 1.10.10.850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 47.0 3.97e-01 76.5% 82.3%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.65 56.0 4.55e-01 100.0% 77.6%
1sxjB03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.60 49.0 4.53e-01 94.1% 93.5%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.60 49.0 4.34e-01 95.6% 73.6%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.58 49.0 4.35e-01 98.5% 77.1%
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 46.0 3.39e-01 88.2% 74.1%
1dc1A02 1.10.238.90 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain 0.55 44.0 4.17e-01 95.6% 88.6%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 38.0 2.68e-01 72.1% 22.9%
3dd7C00 1.20.120.1870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain 0.55 44.0 3.72e-01 91.2% 99.2%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 3.37e-01 100.0% 62.9%
3ibtA02 1.10.210.20 Mainly Alpha › Orthogonal Bundle › Uteroglobin › 0.54 43.0 4.32e-01 94.1% 88.4%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 36.0 3.71e-01 86.8% 73.8%
3ix7A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 35.0 2.96e-01 70.6% 87.0%
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.52 40.0 3.10e-01 86.8% 94.6%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 41.0 3.08e-01 92.6% 55.1%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.51 40.0 3.25e-01 86.8% 78.5%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 45.0 3.87e-01 100.0% 80.9%
3qxfA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 44.0 2.86e-01 98.5% 38.3%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.50 41.0 3.59e-01 98.5% 87.3%
3ea5D00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 40.0 2.28e-01 89.7% 11.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989810 3291.1.1.5 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Relaxase_C 0.65 37.0 3.32e-01 100.0% 38.9%
3402327 3755.3.1.324 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.63 34.0 2.55e-01 97.1% 20.6%
3321993 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 48.0 3.97e-01 91.2% 52.2%
3964363 1051.1.1.0 ↗ alpha superhelices › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain 0.57 39.0 3.46e-01 100.0% 50.5%
3622896 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.57 48.0 3.92e-01 100.0% 65.7%
347579 223.1.1.9 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF484 0.56 46.0 3.39e-01 88.2% 74.1%
3645380 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.56 47.0 3.38e-01 89.7% 35.7%
3824669 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 3.54e-01 89.7% 45.5%
3806180 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 44.0 2.50e-01 88.2% 8.7%
3813320 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 44.0 3.23e-01 89.7% 34.4%
5071514 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 41.0 3.98e-01 82.4% 82.7%
3452003 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.52 44.0 3.08e-01 92.6% 32.7%
3300391 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.52 41.0 3.02e-01 89.7% 32.8%
3478399 604.8.1.0 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.51 40.0 2.74e-01 83.8% 53.0%
D3 medium residues 5-82
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 31.0 3.25e-01 100.0% 52.2%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.89e-01 100.0% 65.9%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 41.0 2.75e-01 79.5% 85.3%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.56 43.0 2.99e-01 84.6% 67.7%
1d2zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 42.0 3.91e-01 84.6% 81.4%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.55 30.0 3.16e-01 100.0% 52.9%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.53 29.0 3.30e-01 100.0% 70.2%
4kdyB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 26.0 2.61e-01 92.3% 43.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801449 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 39.0 2.66e-01 96.2% 16.8%
3930630 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.57 41.0 2.92e-01 78.2% 80.8%
3346100 109.4.1.1544 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120, TPR_CAND1 0.57 39.0 2.17e-01 71.8% 87.5%
3587898 101.1.2.214 ↗ alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.57 39.0 3.40e-01 70.5% 66.7%
3989015 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.50e-01 70.5% 75.2%
3786162 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 34.0 3.22e-01 74.4% 52.6%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 34.0 2.91e-01 75.6% 40.8%
3202986 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 33.0 2.80e-01 75.6% 37.6%
3728013 109.4.1.1940 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120, TPR_CAND1, PF28359 0.54 37.0 2.04e-01 73.1% 9.5%
4933888 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.53 44.0 2.81e-01 100.0% 76.4%
5041315 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 40.0 3.78e-01 84.6% 82.0%
3922802 101.1.2.506 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.53 40.0 3.62e-01 100.0% 56.7%
4565985 5051.1.1.3 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF 0.52 44.0 2.80e-01 100.0% 50.9%
3341083 109.4.1.728 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 37.0 2.58e-01 79.5% 60.9%
3612765 1189.1.1.0 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.51 44.0 2.89e-01 100.0% 72.7%
3996360 109.2.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase 0.50 37.0 2.48e-01 76.9% 44.2%
3811338 109.4.1.2260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_19 0.50 34.0 2.42e-01 71.8% 67.6%
D4 medium residues 207-320_431-452
PDB
Domain cluster: rep: IMGVR_UViG_3300012974_000004-3300012974-Ga0123350_100004325__D105-232
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01555.25 best N6_N4_Mtase 71.1 1.90e-19 98.5% 54.3%
D5 medium residues 453-550
PDB
Domain cluster: rep: IMGVR_UViG_3300026250_000172-3300026250-Ga0209612_101035213__D1-16_86-152
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01555.25 best N6_N4_Mtase 70.5 2.90e-19 67.3% 27.6%