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MN830255.1__QHJ74906.1__X__00019

Bact-Vir

MN830255.1__QHJ74906.1__X__00019

Identity

Accession:
MN830255 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_JNU_P4

TaxID: 2686383

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14657.13 best Arm-DNA-bind_4 40.4 2.40e-10 83.3% 95.7%
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.75 62.0 4.39e-01 94.4% 33.1%
3mq0B02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.74 62.0 4.40e-01 96.3% 34.3%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.73 61.0 4.28e-01 96.3% 33.1%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.70 54.0 4.92e-01 90.7% 64.6%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.69 60.0 4.29e-01 100.0% 43.9%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.69 54.0 3.68e-01 87.0% 76.7%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.68 54.0 3.92e-01 92.6% 30.9%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.65 55.0 3.91e-01 96.3% 40.4%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 53.0 4.13e-01 96.3% 67.4%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 3.83e-01 88.9% 35.8%
4hesA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 52.0 3.38e-01 96.3% 24.7%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 52.0 4.01e-01 100.0% 67.1%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 47.0 4.00e-01 85.2% 67.6%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 46.0 3.61e-01 75.9% 74.1%
6ksrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 50.0 3.65e-01 88.9% 43.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 4.31e-01 92.6% 63.5%
2ex2A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 51.0 3.43e-01 94.4% 32.2%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 46.0 4.17e-01 77.8% 66.7%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 4.18e-01 94.4% 56.9%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.62 52.0 3.24e-01 96.3% 23.8%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 41.0 3.96e-01 70.4% 63.1%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 50.0 4.01e-01 94.4% 58.8%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.62 49.0 3.57e-01 94.4% 39.5%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.61 48.0 3.84e-01 88.9% 76.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 44.0 3.23e-01 81.5% 25.1%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 50.0 3.16e-01 92.6% 96.6%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.60 45.0 3.94e-01 88.9% 89.6%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 45.0 3.44e-01 88.9% 67.8%
5ekaA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.59 41.0 3.55e-01 98.1% 47.1%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.59 43.0 4.01e-01 83.3% 70.8%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.04e-01 100.0% 52.4%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.79e-01 88.9% 74.2%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 45.0 3.36e-01 94.4% 60.4%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.56 37.0 2.74e-01 70.4% 63.9%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 43.0 3.06e-01 85.2% 52.2%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 45.0 3.74e-01 100.0% 90.1%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.69e-01 98.1% 84.5%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.33e-01 83.3% 77.5%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.55 41.0 4.11e-01 83.3% 100.0%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 39.0 3.36e-01 81.5% 47.2%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.74e-01 94.4% 88.1%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.39e-01 98.1% 64.7%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 36.0 3.15e-01 81.5% 43.3%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.53 44.0 3.17e-01 100.0% 41.2%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 43.0 2.84e-01 94.4% 95.4%
3bk2A03 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 41.0 3.57e-01 96.3% 62.6%
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 35.0 3.25e-01 81.5% 50.6%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 40.0 2.64e-01 85.2% 84.3%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.52 37.0 3.28e-01 83.3% 56.7%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.52 40.0 3.41e-01 100.0% 52.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 36.0 3.38e-01 79.6% 60.5%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 36.0 3.35e-01 77.8% 81.3%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.43e-01 83.3% 82.5%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.09e-01 94.4% 91.9%
3g1pA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 43.0 2.83e-01 100.0% 33.7%
1ej6A02 3.55.60.10 Alpha Beta › 3-Layer(bab) Sandwich › Reovirus components fold › Reovirus components 0.51 39.0 2.84e-01 83.3% 64.2%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 38.0 2.89e-01 90.7% 72.0%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589882 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.94 79.0 8.21e-01 88.9% 96.0%
4034091 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.88 72.0 7.49e-01 87.0% 98.0%
3587376 386.1.1.344 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 0.84 71.0 7.05e-01 90.7% 98.2%
3588192 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.84 68.0 7.07e-01 87.0% 100.0%
4927093 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 60.0 4.62e-01 96.3% 40.6%
4979132 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.72 59.0 4.62e-01 96.3% 41.4%
3080512 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.71 59.0 4.96e-01 96.3% 54.6%
5053329 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 59.0 4.73e-01 100.0% 65.0%
3170899 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.70 55.0 4.51e-01 90.7% 45.7%
3786356 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.70 53.0 4.36e-01 90.7% 42.7%
5077459 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 59.0 4.43e-01 100.0% 45.5%
4023558 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.69 46.0 2.78e-01 70.4% 10.7%
3321360 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.69 55.0 5.00e-01 90.7% 85.3%
3253183 328.8.1.1 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.68 60.0 3.82e-01 100.0% 63.8%
4968695 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.68 54.0 3.94e-01 90.7% 86.3%
3206409 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 54.0 3.98e-01 94.4% 37.5%
5021185 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 55.0 3.88e-01 92.6% 39.4%
4971260 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 58.0 4.42e-01 100.0% 50.8%
3596303 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 52.0 4.82e-01 92.6% 68.0%
4394739 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 51.0 4.83e-01 90.7% 98.6%
5053632 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 55.0 4.29e-01 96.3% 43.2%
387703 636.1.1.1 ↗ alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › IpaB_EvcA 0.65 45.0 3.08e-01 72.2% 69.9%
4344957 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.65 56.0 4.50e-01 96.3% 69.5%
169352 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.65 57.0 4.47e-01 100.0% 69.5%
4641382 4099.1.1.32 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 0.65 50.0 3.70e-01 90.7% 31.5%
3974494 330.1.1.34 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6348 0.65 52.0 4.45e-01 94.4% 60.0%
3220245 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.64 44.0 3.08e-01 72.2% 24.4%
3593375 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 49.0 4.85e-01 90.7% 98.3%
4021631 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.64 44.0 2.98e-01 72.2% 40.0%
3363263 3662.1.1.3 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 0.64 50.0 3.98e-01 87.0% 46.4%
3413652 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 43.0 4.23e-01 72.2% 65.0%
3500471 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.63 49.0 3.68e-01 83.3% 35.4%
3189419 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.63 48.0 3.10e-01 85.2% 37.1%
3200646 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.63 51.0 4.08e-01 88.9% 45.7%
3283383 223.3.1.6 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 0.63 51.0 3.68e-01 96.3% 30.1%
3942972 323.1.1.2 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CAT 0.62 50.0 3.42e-01 94.4% 33.6%
3570820 304.112.1.10 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N 0.62 48.0 3.27e-01 88.9% 89.3%
3589803 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.62 47.0 3.93e-01 85.2% 48.0%
3818469 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.62 49.0 3.92e-01 94.4% 44.0%
3511040 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.61 49.0 4.20e-01 96.3% 90.0%
3743393 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.61 43.0 2.55e-01 74.1% 15.9%
3355880 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.61 44.0 2.73e-01 79.6% 82.9%
3412282 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 49.0 3.82e-01 90.7% 41.7%
3391781 221.1.1.7 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.60 43.0 3.77e-01 83.3% 47.8%
3709549 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 51.0 3.75e-01 100.0% 51.5%
4087213 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 46.0 4.33e-01 96.3% 89.3%
4995744 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 44.0 3.34e-01 77.8% 37.4%
3966741 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 46.0 2.92e-01 94.4% 28.8%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.58 38.0 3.91e-01 72.2% 72.0%
4324528 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.58 39.0 3.54e-01 70.4% 60.0%
3511592 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 45.0 2.92e-01 96.3% 30.1%
5071253 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.57 46.0 3.40e-01 87.0% 85.7%
3210912 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 4.00e-01 90.7% 78.8%
3229557 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.57 46.0 2.76e-01 88.9% 94.5%
3427945 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.57 43.0 3.70e-01 90.7% 53.0%
3225873 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.56 44.0 2.68e-01 85.2% 94.3%
3999127 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.56 40.0 2.21e-01 74.1% 43.9%
3418904 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 43.0 3.67e-01 90.7% 53.0%
3200375 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.55 42.0 2.81e-01 92.6% 19.3%
4951818 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 43.0 3.24e-01 92.6% 56.7%
3605552 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 43.0 3.69e-01 87.0% 52.2%
3391149 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 45.0 2.71e-01 90.7% 14.6%
3639498 101.1.2.722 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6581, PF28722 0.54 39.0 2.42e-01 87.0% 11.1%
3514912 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 44.0 4.02e-01 98.1% 69.3%
4951717 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.54 38.0 3.58e-01 81.5% 80.0%
5032419 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 38.0 2.60e-01 77.8% 37.1%
3389084 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.53 44.0 2.70e-01 92.6% 16.4%
3599838 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 45.0 3.09e-01 100.0% 79.1%
3379810 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 36.0 3.56e-01 81.5% 68.3%
3359808 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.33e-01 98.1% 66.9%
3343692 4.2.1.6 ↗ beta barrels › SH3 › SAND › SAND › SAND_ULT1 0.51 34.0 2.76e-01 85.2% 31.4%
3414363 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.51 42.0 2.62e-01 98.1% 15.4%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.51 46.0 3.00e-01 100.0% 28.4%
3551623 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.51 41.0 3.32e-01 100.0% 50.4%
3211111 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.50 43.0 2.65e-01 98.1% 83.2%
D2 high residues 57-169
PDB
Domain cluster: rep: IMGVR_UViG_3300021488_000008-3300021488-Ga0190305_100017515__D59-140
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13102.13 best Phage_int_SAM_5 40.2 5.20e-10 91.1% 94.1%
PF14659.13 Phage_int_SAM_3 39.7 6.40e-10 50.4% 94.8%
D3 high residues 178-347
PDB
Domain cluster: rep: CAKLQF020000001.1__CAH1070266.1__SAMEA5780031_00360__00352__D220-408
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 63.6 2.80e-17 98.8% 75.0%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.90 75.0 7.38e-01 100.0% 81.0%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.89 86.0 7.69e-01 100.0% 83.7%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.86 77.0 7.73e-01 100.0% 91.3%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.84 63.0 6.35e-01 100.0% 77.1%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.80 76.0 7.00e-01 100.0% 87.7%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 66.0 6.59e-01 100.0% 90.1%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 55.0 5.67e-01 100.0% 79.2%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 65.0 5.58e-01 100.0% 66.9%
3cnlA02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.67 23.0 3.10e-01 90.0% 56.0%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.66 62.0 5.58e-01 100.0% 75.8%
5jnmA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 35.0 3.52e-01 99.4% 69.0%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589872 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.97 77.0 8.29e-01 81.8% 92.7%
4034370 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.92 64.0 7.63e-01 84.1% 99.2%
4994277 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 76.0 7.45e-01 100.0% 81.7%
5059725 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 74.0 7.24e-01 100.0% 80.6%
5028332 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 61.0 7.10e-01 84.1% 94.4%
4637388 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 69.0 6.98e-01 100.0% 80.0%
4446668 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.89 71.0 7.86e-01 82.9% 100.0%
3589779 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 72.0 7.71e-01 84.1% 96.7%
4004483 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 78.0 7.48e-01 100.0% 82.1%
5083074 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 71.0 7.53e-01 82.9% 93.3%
3588206 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 70.0 7.46e-01 84.7% 92.7%
5030307 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 61.0 7.08e-01 84.7% 96.0%
4936284 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 57.0 6.88e-01 82.9% 96.5%
4153666 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 63.0 7.08e-01 84.1% 92.6%
5052541 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 62.0 7.16e-01 84.7% 97.6%
4981577 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 59.0 6.91e-01 84.1% 93.6%
4522024 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 70.0 7.47e-01 82.9% 96.0%
4134015 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 70.0 7.32e-01 82.4% 96.8%
4183457 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 67.0 7.27e-01 100.0% 93.1%
3588110 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 68.0 7.53e-01 82.9% 97.9%
4930303 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 56.0 6.76e-01 84.1% 95.7%
5035582 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 57.0 6.89e-01 84.1% 97.4%
4973226 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 59.0 7.00e-01 86.5% 97.5%
3587374 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 71.0 7.28e-01 84.7% 96.4%
4659012 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 70.0 7.58e-01 83.5% 97.2%
4192665 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 59.0 6.97e-01 83.5% 97.5%
3589594 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 71.0 7.42e-01 84.1% 95.5%
1267972 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 69.0 7.17e-01 81.8% 100.0%
3289618 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 70.0 7.32e-01 83.5% 98.7%
4181053 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 79.0 7.41e-01 100.0% 81.0%
4959579 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 65.0 7.25e-01 84.7% 97.0%
3586881 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 70.0 7.48e-01 84.1% 97.3%
4392937 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 67.0 7.05e-01 100.0% 88.4%
4357768 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 58.0 6.64e-01 82.9% 90.0%
4413773 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 59.0 6.66e-01 84.7% 88.9%
5032561 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 52.0 6.56e-01 81.2% 98.1%
5076857 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 70.0 6.91e-01 100.0% 81.7%
4975762 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 58.0 6.77e-01 82.9% 94.4%
5016981 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 57.0 6.73e-01 84.7% 95.8%
4032881 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 60.0 6.77e-01 83.5% 91.9%
4278298 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 61.0 6.87e-01 83.5% 93.3%
4274013 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 69.0 7.37e-01 84.1% 97.3%
4960057 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 62.0 6.77e-01 82.4% 90.7%
4475168 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 75.0 7.12e-01 100.0% 81.0%
5029991 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 57.0 6.66e-01 83.5% 94.4%
3954716 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 66.0 7.27e-01 84.7% 98.6%
4042318 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 61.0 6.81e-01 81.8% 93.3%
4034079 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 61.0 6.87e-01 78.2% 94.1%
5000880 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 70.0 6.84e-01 100.0% 81.7%
4964228 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 60.0 6.69e-01 84.1% 91.9%
4992939 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 67.0 6.77e-01 100.0% 84.1%
3979114 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 61.0 6.91e-01 89.4% 98.5%
4965845 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 76.0 7.29e-01 100.0% 86.3%
4965169 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 79.0 7.24e-01 100.0% 89.5%
5002702 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 72.0 6.87e-01 100.0% 81.1%
4007744 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 7.28e-01 100.0% 87.8%
5008464 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 65.0 6.36e-01 100.0% 75.7%
3957659 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 62.0 6.97e-01 84.1% 98.5%
4137254 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 66.0 6.90e-01 83.5% 95.5%
4380833 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 65.0 6.63e-01 100.0% 84.8%
5027341 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 67.0 6.94e-01 100.0% 90.6%
5052502 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 60.0 6.74e-01 83.5% 95.6%
4007467 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 74.0 6.68e-01 100.0% 73.6%
4053930 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 66.0 7.06e-01 84.7% 98.0%
4966032 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 60.0 6.68e-01 81.2% 96.3%
4071300 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 62.0 6.88e-01 84.1% 99.3%
4969226 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 62.0 6.93e-01 85.9% 100.0%
5016957 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 74.0 7.34e-01 100.0% 93.1%
4021119 101.1.8.7 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II 0.80 76.0 5.91e-01 100.0% 59.4%
4998701 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 69.0 6.82e-01 100.0% 86.1%
4959043 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 59.0 6.77e-01 80.0% 100.0%
3964171 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 65.0 6.53e-01 100.0% 84.5%
3964227 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 56.0 6.40e-01 82.9% 95.4%
4580960 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 59.0 6.43e-01 82.9% 92.9%
4031846 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 56.0 6.44e-01 82.9% 98.4%
4962932 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 63.0 6.47e-01 83.5% 97.0%
4231677 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 60.0 6.53e-01 82.4% 94.5%
4004713 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 56.0 6.31e-01 93.5% 94.8%
3945675 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 59.0 6.47e-01 84.1% 96.4%
3208241 101.1.8.10 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.75 71.0 5.89e-01 100.0% 78.9%
5058518 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 67.0 6.35e-01 100.0% 83.1%
5011490 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 58.0 6.17e-01 84.7% 94.0%
4928138 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.72 67.0 6.36e-01 98.8% 91.5%
4961786 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 59.0 6.25e-01 85.3% 97.3%
3964657 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 64.0 6.07e-01 100.0% 83.1%