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MN830255.1__QHJ74931.1__X__00044
Bact-VirMN830255.1__QHJ74931.1__X__00044
Identity
- Accession:
- MN830255 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-76
Domain cluster:
rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.70 | 36.0 | 4.54e-01 | 100.0% | 84.6% |
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.65 | 29.0 | 3.63e-01 | 90.9% | 66.7% |
| 5kiqA02 | 3.10.20.890 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 29.0 | 2.85e-01 | 98.5% | 38.9% |
| 2lqoA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 36.0 | 3.34e-01 | 74.2% | 76.1% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.52 | 37.0 | 3.32e-01 | 78.8% | 82.5% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.51 | 39.0 | 3.53e-01 | 87.9% | 88.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3761880 | 356.1.1.0 ↗ | few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors | 0.68 | 30.0 | 4.06e-01 | 90.9% | 100.0% |
| 3438989 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 41.0 | 4.39e-01 | 90.9% | 78.2% |
| 4937917 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 44.0 | 4.92e-01 | 90.9% | 98.0% |
| 3810129 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.58 | 41.0 | 4.17e-01 | 100.0% | 78.5% |
| 3966884 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.57 | 34.0 | 2.78e-01 | 92.4% | 30.0% |
| 3914983 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.57 | 41.0 | 3.00e-01 | 75.8% | 95.7% |
| 3420648 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.55 | 47.0 | 2.91e-01 | 100.0% | 51.3% |
| 3242537 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.55 | 39.0 | 3.76e-01 | 77.3% | 85.0% |
| 3438909 | 1.1.1.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C | 0.55 | 46.0 | 3.28e-01 | 100.0% | 91.3% |
| 2502895 | 2.27.1.0 ↗ | beta barrels › OB-fold | 0.55 | 46.0 | 4.43e-01 | 100.0% | 81.8% |
| 5009746 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 37.0 | 3.59e-01 | 71.2% | 85.3% |
| 3677172 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 39.0 | 3.77e-01 | 80.3% | 86.3% |
| 1681454 | 304.166.1.9 ↗ | a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 | 0.54 | 35.0 | 2.87e-01 | 100.0% | 37.9% |
| 3375836 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.54 | 36.0 | 3.23e-01 | 95.5% | 46.0% |
| 4168203 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 38.0 | 3.62e-01 | 75.8% | 92.5% |
| 3999975 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 37.0 | 3.63e-01 | 74.2% | 86.7% |
| 4983644 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 37.0 | 3.55e-01 | 74.2% | 85.0% |
| 3410778 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.53 | 38.0 | 3.76e-01 | 78.8% | 89.3% |
| 4962194 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.53 | 38.0 | 3.74e-01 | 75.8% | 98.6% |
| 4979291 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.53 | 37.0 | 3.61e-01 | 75.8% | 86.7% |
| 3606265 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.52 | 41.0 | 2.52e-01 | 89.4% | 57.8% |
| 4545641 | 2008.1.1.78 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc | 0.52 | 41.0 | 3.14e-01 | 89.4% | 92.4% |
| 4998490 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.51 | 39.0 | 2.68e-01 | 83.3% | 89.8% |
| 4019819 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.51 | 39.0 | 2.65e-01 | 83.3% | 67.5% |
| 4981712 | 1143.1.1.0 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit | 0.51 | 36.0 | 3.51e-01 | 77.3% | 88.0% |
| 5039450 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.51 | 36.0 | 3.57e-01 | 78.8% | 90.7% |
| 5073891 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 39.0 | 3.42e-01 | 84.8% | 77.0% |
D2
high
residues 83-129
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.71 | 53.0 | 4.21e-01 | 95.7% | 39.6% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 57.0 | 5.66e-01 | 97.9% | 88.2% |
| 2i39B00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.68 | 54.0 | 4.15e-01 | 93.6% | 43.7% |
| 3fdqA01 | 1.20.120.1030 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain | 0.68 | 56.0 | 4.24e-01 | 97.9% | 76.2% |
| 1gv2A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 54.0 | 5.43e-01 | 95.7% | 95.7% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.65 | 44.0 | 3.02e-01 | 70.2% | 87.7% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.13e-01 | 95.7% | 47.7% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 52.0 | 4.14e-01 | 100.0% | 43.7% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 50.0 | 4.46e-01 | 93.6% | 78.4% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.63 | 41.0 | 3.73e-01 | 74.5% | 50.8% |
| 2v57A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 51.0 | 3.55e-01 | 97.9% | 30.4% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.60 | 48.0 | 4.10e-01 | 95.7% | 68.2% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 40.0 | 3.41e-01 | 72.3% | 41.8% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.59 | 46.0 | 4.50e-01 | 97.9% | 98.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 38.0 | 3.55e-01 | 74.5% | 51.7% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 46.0 | 2.80e-01 | 89.4% | 14.7% |
| 7dukB01 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 40.0 | 4.04e-01 | 80.9% | 76.1% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.57 | 45.0 | 4.19e-01 | 100.0% | 79.4% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.57 | 39.0 | 3.37e-01 | 72.3% | 44.2% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 38.0 | 3.14e-01 | 72.3% | 35.9% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 40.0 | 3.05e-01 | 76.6% | 40.4% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 3.21e-01 | 80.9% | 40.9% |
| 2kz6A01 | 6.10.140.1310 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 3.35e-01 | 91.5% | 45.7% |
| 3l9tA02 | 1.25.40.290 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains | 0.54 | 41.0 | 3.26e-01 | 93.6% | 38.1% |
| 5aj3N01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 36.0 | 2.97e-01 | 70.2% | 91.2% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 40.0 | 3.33e-01 | 89.4% | 74.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4386055 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.73 | 56.0 | 3.55e-01 | 95.7% | 16.1% |
| 3925603 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 56.0 | 5.58e-01 | 95.7% | 84.0% |
| 3997733 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 55.0 | 5.06e-01 | 95.7% | 64.6% |
| 3250170 | 3614.1.1.0 ↗ | alpha arrays › T4 RNA ligase › T4 RNA ligase › T4 RNA ligase (Rnl1) C-terminal domain | 0.70 | 59.0 | 4.27e-01 | 97.9% | 37.9% |
| 3505559 | 101.1.6.19 ↗ | alpha arrays › HTH › HTH › TrpR › PAX | 0.67 | 56.0 | 4.95e-01 | 100.0% | 65.3% |
| 3789627 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 56.0 | 5.14e-01 | 100.0% | 75.4% |
| 4994917 | 3834.1.1.25 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 | 0.64 | 40.0 | 2.57e-01 | 74.5% | 12.2% |
| 3568862 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.62 | 48.0 | 4.47e-01 | 100.0% | 67.7% |
| 4303272 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.61 | 48.0 | 2.82e-01 | 91.5% | 10.8% |
| 3620630 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 38.0 | 3.34e-01 | 74.5% | 42.9% |
| 3920862 | 101.1.1.221 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 | 0.59 | 45.0 | 4.47e-01 | 100.0% | 84.0% |
| 4609605 | 7524.1.1.0 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like | 0.58 | 45.0 | 2.99e-01 | 93.6% | 52.8% |
| 3913672 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.58 | 46.0 | 4.10e-01 | 89.4% | 88.6% |
| 4178099 | 632.22.1.176 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF27734 | 0.58 | 41.0 | 2.83e-01 | 74.5% | 22.6% |
| 1901867 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.58 | 44.0 | 2.95e-01 | 93.6% | 55.4% |
| 3953703 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.58 | 40.0 | 2.86e-01 | 72.3% | 63.2% |
| 4101078 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.57 | 44.0 | 2.82e-01 | 93.6% | 44.3% |
| 3234298 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 39.0 | 3.78e-01 | 72.3% | 65.5% |
| 4146694 | 192.29.1.277 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin | 0.57 | 38.0 | 3.53e-01 | 70.2% | 50.8% |
| 3411308 | 101.1.15.2 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C | 0.56 | 45.0 | 3.47e-01 | 100.0% | 97.7% |
| 3794996 | 192.12.1.0 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM | 0.53 | 41.0 | 3.02e-01 | 91.5% | 35.3% |
| 4029196 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.53 | 42.0 | 3.38e-01 | 91.5% | 65.0% |
| 3923557 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 39.0 | 2.56e-01 | 83.0% | 72.5% |