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MN840486.1__QHJ72777.1__X__00061

Bact-Vir

MN840486.1__QHJ72777.1__X__00061

Identity

Accession:
MN840486 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-81
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tuuA00 1.20.140.80 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP 0.61 53.0 4.27e-01 98.6% 68.1%
4jneA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 39.0 3.63e-01 72.2% 63.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3623796 4154.1.1.1 beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP 0.69 53.0 4.23e-01 84.7% 100.0%
3241258 4154.1.1.1 beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP 0.59 51.0 4.07e-01 98.6% 65.3%
3270612 4154.1.1.1 beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP 0.53 46.0 4.13e-01 100.0% 94.3%
D2 medium residues 88-119
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 52.0 3.71e-01 93.8% 75.5%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.66 47.0 3.28e-01 93.8% 22.1%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 51.0 3.44e-01 93.8% 22.4%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 52.0 3.66e-01 100.0% 51.6%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 47.0 3.99e-01 87.5% 41.9%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 50.0 3.19e-01 93.8% 57.1%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 53.0 3.06e-01 100.0% 34.8%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 53.0 3.91e-01 100.0% 73.7%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.21e-01 93.8% 72.6%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 51.0 2.95e-01 100.0% 38.3%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 51.0 3.61e-01 100.0% 48.3%
3b0xA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 48.0 3.50e-01 90.6% 29.5%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.64 49.0 4.67e-01 96.9% 86.0%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 48.0 3.86e-01 96.9% 57.5%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.62 48.0 3.89e-01 93.8% 43.5%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 51.0 4.34e-01 100.0% 72.4%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.45e-01 96.9% 76.0%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 3.47e-01 100.0% 78.8%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 4.01e-01 100.0% 58.2%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.61 46.0 3.47e-01 96.9% 32.7%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 46.0 2.96e-01 100.0% 36.6%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 2.95e-01 100.0% 48.4%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.60 47.0 3.03e-01 93.8% 18.8%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 3.66e-01 96.9% 72.5%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 45.0 3.81e-01 96.9% 78.8%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.59 44.0 2.85e-01 93.8% 19.4%
4l1mB00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.58 43.0 2.52e-01 93.8% 20.4%
1h6vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 2.82e-01 100.0% 50.9%
1u0tA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.58 44.0 3.04e-01 93.8% 71.5%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 3.61e-01 100.0% 72.7%
2napA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 44.0 2.66e-01 96.9% 61.0%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 44.0 2.52e-01 100.0% 27.0%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.57 43.0 3.50e-01 93.8% 68.0%
2haxA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 4.06e-01 96.9% 72.1%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.56 44.0 3.16e-01 93.8% 100.0%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 2.85e-01 93.8% 34.6%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.56 41.0 3.57e-01 93.8% 69.4%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 42.0 2.66e-01 100.0% 50.0%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 2.98e-01 100.0% 39.8%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.17e-01 100.0% 44.4%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 40.0 2.94e-01 90.6% 91.6%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 2.55e-01 100.0% 73.4%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.12e-01 100.0% 57.3%
3lhxA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 37.0 2.31e-01 93.8% 42.0%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 2.86e-01 100.0% 48.7%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.53 41.0 3.19e-01 100.0% 36.7%
2if7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 2.81e-01 84.4% 69.2%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.22e-01 100.0% 41.0%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.42e-01 90.6% 47.1%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.52 37.0 3.31e-01 93.8% 44.8%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.86e-01 96.9% 93.9%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 37.0 2.24e-01 96.9% 12.9%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 37.0 2.97e-01 100.0% 41.3%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 38.0 3.25e-01 100.0% 77.9%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 35.0 2.64e-01 71.9% 45.1%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.50 35.0 1.96e-01 93.8% 7.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3479756 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 57.0 4.02e-01 100.0% 42.9%
3620552 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 51.0 4.69e-01 100.0% 64.0%
4331473 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.65 52.0 4.04e-01 96.9% 50.0%
4998870 4.1.1.483 beta barrels › SH3 › SH3 › SH3 › RRXRR 0.65 53.0 4.02e-01 100.0% 45.9%
5055246 103.6.1.1 alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.63 46.0 3.51e-01 87.5% 31.5%
4066093 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.62 49.0 2.89e-01 100.0% 32.4%
4933787 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.62 49.0 3.21e-01 100.0% 41.8%
151131 316.1.1.21 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.62 46.0 3.05e-01 90.6% 19.0%
2048175 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 48.0 3.47e-01 100.0% 67.5%
4484643 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 44.0 2.50e-01 100.0% 60.7%
4862202 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 50.0 4.53e-01 100.0% 85.7%
4477006 874.1.1.2 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › MukB_hinge 0.61 47.0 2.66e-01 93.8% 16.7%
4933665 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.61 47.0 3.60e-01 100.0% 67.8%
1269916 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 45.0 3.36e-01 100.0% 66.4%
4537639 874.1.1.0 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.60 47.0 2.64e-01 93.8% 14.4%
1270402 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.60 47.0 3.19e-01 100.0% 71.9%
5075316 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.60 46.0 3.81e-01 96.9% 44.3%
4110937 874.1.1.2 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › MukB_hinge 0.60 47.0 3.05e-01 93.8% 41.2%
4659440 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 45.0 3.10e-01 93.8% 21.5%
4124640 874.1.1.2 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › MukB_hinge 0.60 47.0 2.77e-01 93.8% 24.6%
3164224 874.1.1.2 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › MukB_hinge 0.60 48.0 3.36e-01 93.8% 60.9%
4247514 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 46.0 3.24e-01 100.0% 28.9%
4166118 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 44.0 3.16e-01 100.0% 28.1%
3641401 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.60 46.0 2.61e-01 100.0% 8.7%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 46.0 4.12e-01 100.0% 60.0%
3615400 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 43.0 2.87e-01 100.0% 63.8%
3665681 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.59 45.0 2.57e-01 100.0% 8.6%
4948490 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.68e-01 100.0% 45.3%
3955689 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.58 46.0 3.43e-01 100.0% 37.0%
5055849 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.58 44.0 3.67e-01 93.8% 46.2%
4987919 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.57 45.0 3.92e-01 100.0% 74.1%
4185190 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.57 43.0 4.10e-01 93.8% 86.7%
None 0.57 45.0 2.63e-01 100.0% 31.5%
5061254 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.56 41.0 2.47e-01 93.8% 9.5%
4118349 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 44.0 3.05e-01 100.0% 28.9%
2323952 4.29.1.1 beta barrels › SH3 › Pyrrolysyl-tRNA synthetase tRNA binding domain › Pyrrolysyl-tRNA synthetase tRNA binding domain › PF31240 0.56 42.0 3.30e-01 96.9% 48.8%
3242245 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.56 43.0 3.68e-01 96.9% 81.5%
3773509 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.79e-01 100.0% 58.3%
3964629 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.11e-01 100.0% 29.6%
3668711 109.4.1.916 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_COPA_B 0.55 44.0 2.59e-01 96.9% 9.7%
3214129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.04e-01 100.0% 31.2%
3386519 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.55 42.0 2.44e-01 100.0% 83.7%
5004623 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.07e-01 93.8% 50.5%
4366041 244.1.1.18 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding-like 0.53 39.0 2.32e-01 100.0% 74.6%
3810757 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 39.0 2.21e-01 96.9% 59.6%
3350152 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 37.0 2.20e-01 96.9% 12.7%
4004179 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 39.0 2.48e-01 100.0% 23.9%
3386462 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 36.0 2.85e-01 100.0% 66.7%
3213389 922.1.1.3 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_CCN 0.52 36.0 3.63e-01 96.9% 80.0%
3312580 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.51 36.0 2.28e-01 96.9% 16.4%
3676012 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 38.0 2.24e-01 96.9% 81.1%
3630302 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.51 36.0 2.79e-01 100.0% 49.1%