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MN840487.1__QHJ72810.1__X__00008
Bact-VirMN840487.1__QHJ72810.1__X__00008
Identity
- Accession:
- MN840487 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
TaxID: 2692740
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 60-115
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.69 | 60.0 | 5.13e-01 | 100.0% | 60.2% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 48.0 | 4.55e-01 | 75.0% | 100.0% |
| 1lwbA00 | 1.20.90.10 | Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain | 0.64 | 42.0 | 3.35e-01 | 80.4% | 32.0% |
| 6y4rA01 | 1.25.40.590 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU | 0.62 | 45.0 | 3.27e-01 | 78.6% | 32.1% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 43.0 | 3.49e-01 | 80.4% | 38.9% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.61 | 39.0 | 3.44e-01 | 75.0% | 42.4% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 53.0 | 4.81e-01 | 100.0% | 74.7% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.59 | 50.0 | 4.20e-01 | 100.0% | 54.5% |
| 2cvzA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 47.0 | 3.60e-01 | 89.3% | 59.8% |
| 4kxfB02 | 1.10.1900.50 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › | 0.58 | 40.0 | 4.04e-01 | 100.0% | 71.9% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 39.0 | 3.44e-01 | 75.0% | 47.0% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 35.0 | 3.71e-01 | 100.0% | 68.0% |
| 3f0zA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.57 | 48.0 | 3.76e-01 | 96.4% | 59.5% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 47.0 | 4.28e-01 | 100.0% | 75.9% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.56 | 38.0 | 3.34e-01 | 71.4% | 53.9% |
| 3vnxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 47.0 | 3.33e-01 | 100.0% | 70.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 48.0 | 4.18e-01 | 100.0% | 67.0% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 47.0 | 3.95e-01 | 100.0% | 62.0% |
| 1z19A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.54 | 45.0 | 3.86e-01 | 100.0% | 79.0% |
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.54 | 37.0 | 3.79e-01 | 71.4% | 79.6% |
| 2aqwA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 47.0 | 2.94e-01 | 100.0% | 19.6% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.54 | 37.0 | 3.43e-01 | 76.8% | 54.5% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.52 | 40.0 | 3.78e-01 | 100.0% | 66.7% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.52 | 44.0 | 4.14e-01 | 100.0% | 83.3% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.51 | 41.0 | 3.97e-01 | 100.0% | 86.4% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.51 | 38.0 | 3.42e-01 | 83.9% | 60.0% |
| 2owaA01 | 1.10.220.150 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein | 0.51 | 40.0 | 3.38e-01 | 100.0% | 62.5% |
| 2mbfA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 42.0 | 3.60e-01 | 98.2% | 68.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3255444 | 155.1.1.1 ↗ | alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP | 0.74 | 51.0 | 4.87e-01 | 96.4% | 62.5% |
| 3546236 | 377.1.1.97 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › VHP | 0.73 | 50.0 | 4.70e-01 | 98.2% | 58.8% |
| 3265417 | 155.1.1.1 ↗ | alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP | 0.73 | 49.0 | 4.91e-01 | 96.4% | 67.8% |
| 4002673 | 155.1.1.1 ↗ | alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP | 0.70 | 48.0 | 4.48e-01 | 96.4% | 57.1% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.70 | 46.0 | 4.29e-01 | 92.9% | 55.1% |
| 3997639 | 7563.1.1.0 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related | 0.69 | 46.0 | 2.87e-01 | 76.8% | 12.4% |
| 3848311 | 155.1.1.1 ↗ | alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP | 0.68 | 47.0 | 4.34e-01 | 98.2% | 54.7% |
| 3482082 | 3476.1.1.0 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain | 0.66 | 47.0 | 4.43e-01 | 76.8% | 61.4% |
| 4019335 | 4336.2.1.0 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 | 0.66 | 50.0 | 3.98e-01 | 82.1% | 42.7% |
| 3991595 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 42.0 | 3.57e-01 | 75.0% | 40.0% |
| 4936966 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 50.0 | 4.70e-01 | 100.0% | 68.6% |
| 3281161 | 632.22.1.100 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF28103 | 0.64 | 56.0 | 4.93e-01 | 100.0% | 70.6% |
| 3592885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 44.0 | 4.29e-01 | 71.4% | 71.7% |
| 4401280 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.62 | 49.0 | 4.64e-01 | 100.0% | 74.3% |
| 4115604 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.60 | 45.0 | 2.85e-01 | 82.1% | 42.6% |
| 3741023 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.59 | 47.0 | 3.12e-01 | 89.3% | 23.7% |
| 4017646 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 41.0 | 2.43e-01 | 83.9% | 9.8% |
| 3617495 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.58 | 42.0 | 3.74e-01 | 82.1% | 54.4% |
| 3568856 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.58 | 39.0 | 3.38e-01 | 71.4% | 93.3% |
| 3282674 | 371.1.1.3 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_3 | 0.56 | 41.0 | 3.43e-01 | 78.6% | 48.0% |
| 3221474 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.54 | 46.0 | 3.19e-01 | 100.0% | 67.0% |
| 3991144 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.53 | 40.0 | 3.51e-01 | 85.7% | 55.6% |
| 3998578 | 142.1.1.41 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC | 0.52 | 43.0 | 4.11e-01 | 100.0% | 80.0% |
| 4000800 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.52 | 36.0 | 2.66e-01 | 75.0% | 25.5% |
| 4150217 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.52 | 43.0 | 3.82e-01 | 100.0% | 76.7% |