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MN844877.1__QHJ75328.1__SnaR1_gp43__00043
Bact-VirMN844877.1__QHJ75328.1__SnaR1_gp43__00043
Identity
- Accession:
- MN844877 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Natansvirus›
Sphaerotilus_phage_vB_SnaP-R1
TaxID: 2696336
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-93_119-131_238-257
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00224__D16-124_253-277
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05268.19 best | GP38 | 51.9 | 1.60e-13 | 86.0% | 35.7% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eqnA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 60.0 | 4.15e-01 | 100.0% | 47.2% |
| 1qjvA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 61.0 | 4.20e-01 | 100.0% | 45.3% |
| 4dgfA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.60 | 48.0 | 4.67e-01 | 94.4% | 76.2% |
| 4dghA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.60 | 48.0 | 4.54e-01 | 94.4% | 72.7% |
| 2hy5C00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.54 | 39.0 | 4.05e-01 | 92.5% | 81.2% |
| 4m8dA00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.54 | 45.0 | 3.44e-01 | 93.5% | 56.5% |
| 4co9A00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.52 | 44.0 | 3.60e-01 | 93.5% | 59.4% |
| 4jhmA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.52 | 44.0 | 3.37e-01 | 93.5% | 50.2% |
| 16pkA02 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.51 | 44.0 | 3.55e-01 | 94.4% | 90.4% |
| 3gk7A01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.50 | 37.0 | 3.21e-01 | 81.3% | 46.7% |
| 2gpjA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.50 | 41.0 | 3.75e-01 | 89.7% | 93.8% |
| 2qs7A00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.50 | 42.0 | 3.91e-01 | 93.5% | 86.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3714743 | 2486.1.1.0 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase | 0.66 | 60.0 | 4.32e-01 | 100.0% | 56.0% |
| 5066620 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.65 | 55.0 | 4.37e-01 | 92.5% | 86.3% |
| 4041561 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.64 | 58.0 | 4.36e-01 | 100.0% | 89.0% |
| 4481179 | 207.1.1.58 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRRCT,LRR_8 | 0.63 | 57.0 | 3.79e-01 | 100.0% | 30.6% |
| 3226237 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.61 | 53.0 | 4.06e-01 | 96.3% | 63.9% |
| 5039927 | 7542.1.2.1 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › Aconitase | 0.61 | 45.0 | 4.32e-01 | 100.0% | 69.2% |
| 3175357 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.60 | 51.0 | 4.66e-01 | 93.5% | 93.8% |
| 4235758 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.60 | 46.0 | 4.89e-01 | 90.7% | 93.7% |
| 4989876 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.58 | 37.0 | 4.27e-01 | 79.4% | 95.7% |
| 3936696 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 51.0 | 3.85e-01 | 100.0% | 42.6% |
| 3241572 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.56 | 49.0 | 3.98e-01 | 98.1% | 51.9% |
| 4291550 | 7542.1.2.1 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › Aconitase | 0.54 | 43.0 | 4.22e-01 | 93.5% | 79.1% |
| 5065285 | 2487.1.1.9 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase | 0.54 | 45.0 | 3.55e-01 | 92.5% | 69.8% |
| 3507434 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.50 | 42.0 | 3.87e-01 | 91.6% | 77.1% |
D2
medium
residues 99-111_135-237
Domain cluster:
representative