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MN844877.1__QHJ75350.1__SnaR1_gp3__00003
Bact-VirMN844877.1__QHJ75350.1__SnaR1_gp3__00003
Identity
- Accession:
- MN844877 ↗
- Kingdom:
- phage
Quality
62.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Natansvirus›
Sphaerotilus_phage_vB_SnaP-R1
TaxID: 2696336
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-76
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b34B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 55.0 | 4.97e-01 | 100.0% | 58.1% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 4.89e-01 | 100.0% | 60.6% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 53.0 | 4.94e-01 | 100.0% | 64.8% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 53.0 | 4.68e-01 | 100.0% | 58.5% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 51.0 | 4.93e-01 | 100.0% | 72.3% |
| 2l55A00 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.63 | 54.0 | 4.83e-01 | 100.0% | 86.6% |
| 2vc8A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 4.47e-01 | 100.0% | 65.3% |
| 1ycyA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.50e-01 | 100.0% | 72.6% |
| 2rk0A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 49.0 | 3.79e-01 | 100.0% | 40.5% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 46.0 | 4.40e-01 | 100.0% | 71.2% |
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.57 | 43.0 | 3.67e-01 | 83.9% | 80.4% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 3.53e-01 | 89.3% | 61.4% |
| 3ptaA03 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.54 | 45.0 | 3.32e-01 | 100.0% | 61.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 42.0 | 3.87e-01 | 89.3% | 72.7% |
| 7ffnN01 | 2.60.40.3200 | Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain | 0.54 | 45.0 | 3.21e-01 | 96.4% | 52.5% |
| 4ntcA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 3.22e-01 | 100.0% | 57.2% |
| 7bvaA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.54 | 42.0 | 2.94e-01 | 94.6% | 83.6% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.71e-01 | 96.4% | 63.1% |
| 3s98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.74e-01 | 94.6% | 85.3% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.52 | 37.0 | 3.88e-01 | 89.3% | 90.0% |
| 1ejfA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.46e-01 | 92.9% | 87.3% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.49e-01 | 89.3% | 26.3% |
| 2wolA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 43.0 | 2.70e-01 | 96.4% | 83.2% |
| 2l97A01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.50 | 39.0 | 3.44e-01 | 94.6% | 96.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3227009 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.76 | 55.0 | 4.95e-01 | 98.2% | 57.3% |
| 3602785 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 53.0 | 5.26e-01 | 100.0% | 70.0% |
| 3793196 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.75 | 56.0 | 4.70e-01 | 100.0% | 48.9% |
| 3619686 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.75 | 55.0 | 5.61e-01 | 100.0% | 80.0% |
| 3772638 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.74 | 55.0 | 4.82e-01 | 100.0% | 54.3% |
| 2701178 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.74 | 54.0 | 4.68e-01 | 100.0% | 50.6% |
| 3500684 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.71 | 55.0 | 4.83e-01 | 100.0% | 57.5% |
| 3740204 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.71 | 52.0 | 4.55e-01 | 100.0% | 51.8% |
| 4987003 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.70 | 53.0 | 5.05e-01 | 100.0% | 70.8% |
| 3936053 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.67 | 50.0 | 4.67e-01 | 100.0% | 64.3% |
| 4032314 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 55.0 | 4.41e-01 | 100.0% | 83.5% |
| 166026 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.63 | 48.0 | 4.47e-01 | 100.0% | 65.3% |
| 4027965 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 46.0 | 2.91e-01 | 91.1% | 15.5% |
| 4961746 | 304.8.1.122 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N | 0.51 | 43.0 | 3.51e-01 | 100.0% | 60.0% |