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MN844877.1__QHJ75362.1__SnaR1_gp21__00021

Bact-Vir

MN844877.1__QHJ75362.1__SnaR1_gp21__00021

Identity

Accession:
MN844877 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Natansvirus› Sphaerotilus_phage_vB_SnaP-R1

TaxID: 2696336

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-32
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q52A00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.76 67.0 4.16e-01 100.0% 17.7%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.70 50.0 3.19e-01 83.9% 15.6%
4fvmA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 50.0 3.10e-01 93.5% 96.6%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.68 49.0 3.17e-01 100.0% 14.4%
2c1lA02 2.40.330.30 Mainly Beta › Beta Barrel › At1g16640 B3 domain › 0.68 48.0 3.00e-01 100.0% 13.5%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 3.49e-01 96.8% 79.2%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.62 48.0 3.44e-01 93.5% 91.3%
1a8mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 3.27e-01 100.0% 53.3%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 3.17e-01 80.6% 49.5%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 44.0 2.50e-01 90.3% 28.1%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 3.16e-01 96.8% 55.6%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.60 45.0 3.43e-01 100.0% 33.0%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 3.08e-01 96.8% 18.9%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.59 49.0 2.96e-01 100.0% 14.6%
3e1uA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 43.0 2.87e-01 100.0% 38.0%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 41.0 2.45e-01 90.3% 17.3%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.58 45.0 2.77e-01 100.0% 75.2%
2f7sA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 2.57e-01 100.0% 10.6%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 2.79e-01 96.8% 56.8%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.57 42.0 2.62e-01 96.8% 11.7%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 2.96e-01 100.0% 53.5%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.56 39.0 2.29e-01 90.3% 27.6%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.55 44.0 3.26e-01 100.0% 33.3%
3cxbA02 3.30.390.70 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein 0.55 42.0 3.06e-01 80.6% 23.6%
4mx8C01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 38.0 2.59e-01 100.0% 15.9%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 40.0 2.40e-01 96.8% 64.0%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 39.0 2.54e-01 93.5% 16.3%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 43.0 2.49e-01 93.5% 26.0%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 2.89e-01 100.0% 31.2%
2ezvA01 3.40.600.40 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain 0.54 40.0 2.57e-01 93.5% 23.4%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.53 41.0 3.03e-01 100.0% 72.3%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 2.83e-01 96.8% 28.1%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 2.73e-01 83.9% 86.4%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.76e-01 100.0% 48.7%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 35.0 2.52e-01 87.1% 35.9%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 41.0 2.62e-01 90.3% 14.3%
2psmC01 2.20.28.230 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 36.0 3.20e-01 71.0% 69.2%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 2.66e-01 83.9% 55.6%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 33.0 2.14e-01 87.1% 49.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936007 3994.1.1.2 ↗ a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG › PhnG 0.79 61.0 4.10e-01 100.0% 21.5%
3578502 2006.1.6.39 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb 0.79 63.0 3.65e-01 90.3% 81.5%
4244412 11.1.1.929 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28202 0.75 57.0 3.60e-01 80.6% 15.6%
4936511 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.71 56.0 3.99e-01 93.5% 26.4%
3993483 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.71 54.0 3.93e-01 100.0% 67.6%
3170704 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 50.0 2.86e-01 93.5% 11.5%
3200725 10.32.1.252 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7371 0.67 54.0 3.38e-01 100.0% 65.2%
4238279 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.66 48.0 3.49e-01 93.5% 65.2%
5066049 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.66 47.0 2.95e-01 100.0% 12.9%
4033381 3218.1.1.1 ↗ a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 0.66 51.0 4.16e-01 100.0% 54.3%
3216497 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.65 49.0 4.40e-01 93.5% 60.4%
5009735 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.65 52.0 3.28e-01 96.8% 16.0%
4944655 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 49.0 3.32e-01 90.3% 85.2%
3401054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 50.0 3.77e-01 83.9% 75.3%
4996356 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.64 47.0 3.17e-01 80.6% 17.9%
4947504 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.63 47.0 3.02e-01 100.0% 15.7%
3561019 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.62 49.0 3.39e-01 93.5% 31.5%
3275992 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.62 47.0 3.00e-01 90.3% 49.5%
3929202 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.61 45.0 3.22e-01 71.0% 21.0%
3939681 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.61 48.0 2.83e-01 100.0% 10.6%
4941422 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.61 43.0 2.80e-01 100.0% 14.4%
4961400 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.60 49.0 3.44e-01 100.0% 30.5%
3568883 243.3.1.27 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Dynactin_p62 0.60 41.0 3.05e-01 100.0% 22.1%
4858268 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 4.08e-01 90.3% 58.3%
3584211 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 53.0 3.43e-01 80.6% 17.2%
5044368 327.17.1.9 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › OsmC 0.60 42.0 2.90e-01 77.4% 17.1%
3505969 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 2.93e-01 96.8% 22.7%
3879556 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.60 44.0 2.92e-01 100.0% 36.3%
3888095 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.59 44.0 3.04e-01 87.1% 30.0%
3210524 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.59 42.0 3.43e-01 90.3% 93.8%
4969690 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.59 42.0 2.68e-01 90.3% 86.5%
3497884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.09e-01 100.0% 25.7%
3462646 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 49.0 3.55e-01 100.0% 63.0%
3516949 221.3.1.0 ↗ a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.57 40.0 3.89e-01 100.0% 57.5%
3997414 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.57 42.0 2.55e-01 93.5% 70.5%
3960795 706.2.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.57 43.0 4.02e-01 90.3% 73.3%
5078344 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.56 44.0 2.80e-01 100.0% 16.8%
3212196 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 43.0 3.19e-01 100.0% 66.1%
3711494 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.56 40.0 3.24e-01 100.0% 96.8%
3307357 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.56 45.0 4.43e-01 71.0% 62.9%
4227571 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.56 41.0 3.13e-01 100.0% 32.0%
3964061 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.56 43.0 3.18e-01 100.0% 30.8%
4088528 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.55 43.0 3.15e-01 100.0% 32.0%
4809616 2.9.1.4 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB, Dis3l2_C_term 0.55 40.0 2.36e-01 100.0% 8.1%
5074340 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 41.0 2.80e-01 80.6% 16.4%
3316930 67.1.1.0 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.55 39.0 3.43e-01 83.9% 41.5%
3827633 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 38.0 2.69e-01 100.0% 19.2%
4940944 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 44.0 3.07e-01 100.0% 25.6%
5011691 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 2.87e-01 87.1% 32.2%
3517805 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.54 37.0 3.47e-01 71.0% 62.2%
3190573 706.2.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.53 38.0 3.42e-01 93.5% 45.5%
5065691 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.53 40.0 2.85e-01 90.3% 25.0%
3576134 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.58e-01 93.5% 62.0%
5010745 3781.2.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › ssDNA-binding protein ThermoDBP-related › ssDNA-binding protein ThermoDBP-related › ThermoDBP-RP_arch 0.53 43.0 2.96e-01 74.2% 63.3%
5067017 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.53 35.0 2.38e-01 100.0% 16.0%
3703228 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 42.0 3.20e-01 100.0% 82.2%
5078345 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.52 40.0 2.59e-01 96.8% 15.2%
4449302 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 2.87e-01 100.0% 58.1%
3182396 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.50 38.0 2.97e-01 100.0% 80.0%