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MN850641.1__QHR74839.1__tonijn_23__00023

Bact-Vir

MN850641.1__QHR74839.1__tonijn_23__00023

Identity

Accession:
MN850641 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Warwickvirus› Escherichia_phage_tonijn

TaxID: 2696450

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: rep: OP053362.1__UYE97284.1__X__00119__D149-247
D2 high residues 172-276
PDB
Domain cluster: rep: OP381444.1__UYE91028.1__P21_00051__00051__D444-537
D3 high residues 309-367
PDB
Domain cluster: rep: MZ501112.1__QXV85762.1__bas23_0022__00022__D334-391
D4 high residues 392-455
PDB
Domain cluster: rep: MZ501112.1__QXV85762.1__bas23_0022__00022__D400-469
D5 medium residues 115-148
PDB
Domain cluster: representative
D6 medium residues 466-624
PDB
Domain cluster: rep: JF317274.1__AEQ18751.1__X__00005__D618-749
D7 medium residues 711-779
PDB
Domain cluster: rep: OK018184.1__UDY80622.1__X__00229__D204-264
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.70 48.0 4.72e-01 100.0% 66.7%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.68 44.0 3.22e-01 76.8% 25.0%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.66 49.0 3.75e-01 78.3% 85.1%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.66 44.0 3.96e-01 92.8% 50.0%
3g9kF01 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.63 45.0 3.49e-01 76.8% 87.7%
2e5aA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.61 42.0 3.87e-01 72.5% 62.4%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.60 44.0 3.87e-01 78.3% 65.7%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.59 42.0 2.80e-01 76.8% 38.4%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.38e-01 76.8% 42.8%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 40.0 3.11e-01 76.8% 34.3%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 49.0 3.60e-01 100.0% 62.8%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 44.0 2.93e-01 94.2% 57.7%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.54 37.0 2.97e-01 75.4% 33.6%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 46.0 3.50e-01 100.0% 66.3%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 45.0 3.33e-01 100.0% 71.2%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.83e-01 97.1% 63.0%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.50 37.0 2.71e-01 82.6% 89.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1841016 79.1.1.9 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.74 69.0 4.62e-01 100.0% 36.6%
2417913 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.74 68.0 4.16e-01 100.0% 22.2%
1137418 3797.1.1.1 ↗ beta meanders › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 › DUF2782 0.70 48.0 4.72e-01 100.0% 66.7%
1097232 3180.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.64 41.0 3.54e-01 76.8% 42.1%
3917386 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.55 47.0 3.61e-01 100.0% 67.4%
4544843 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.55 38.0 3.08e-01 72.5% 97.0%
3512316 5.1.5.69 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nbas_N 0.53 41.0 2.72e-01 89.9% 76.7%
3371877 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.75e-01 92.8% 54.5%
4941973 314.1.1.4 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2c 0.53 43.0 2.61e-01 91.3% 47.8%
3228184 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.53 39.0 3.25e-01 79.7% 48.0%
4977122 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.52 43.0 2.94e-01 92.8% 78.1%
None — 0.52 41.0 2.28e-01 92.8% 30.1%
3497478 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.51 40.0 2.90e-01 88.4% 28.4%
3496817 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.51 45.0 3.44e-01 100.0% 60.6%