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MN857473.1__QOC54122.1__X__00007
Bact-VirMN857473.1__QOC54122.1__X__00007
Identity
- Accession:
- MN857473 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Taxonomy
TaxID: 2759120
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-78
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 40.0 | 2.96e-01 | 83.1% | 94.9% |
| 1mk1A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 36.0 | 2.81e-01 | 76.6% | 62.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3941676 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.53 | 31.0 | 3.28e-01 | 100.0% | 62.9% |
| 3954005 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.53 | 30.0 | 3.35e-01 | 100.0% | 71.7% |
| 4025046 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.52 | 39.0 | 2.98e-01 | 81.8% | 95.3% |
| 3227803 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.51 | 31.0 | 3.35e-01 | 90.9% | 72.3% |
D2
high
residues 88-158
Domain cluster:
rep: KM199771.1__AIK68528.1__Lo5R7ANS_58__00058__D55-134
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 48.0 | 4.97e-01 | 98.6% | 80.6% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 51.0 | 5.25e-01 | 88.7% | 98.5% |
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 46.0 | 4.74e-01 | 98.6% | 82.1% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 39.0 | 4.49e-01 | 84.5% | 93.6% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 35.0 | 4.09e-01 | 83.1% | 79.2% |
| 2kpjA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 51.0 | 5.15e-01 | 94.4% | 92.9% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 54.0 | 5.29e-01 | 100.0% | 92.2% |
| 3f51C00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 54.0 | 5.02e-01 | 100.0% | 78.9% |
| 2in3A02 | 1.10.472.60 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › putative protein disulfide isomerase domain | 0.62 | 50.0 | 4.29e-01 | 97.2% | 53.7% |
| 3pxpA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 51.0 | 4.78e-01 | 100.0% | 87.1% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 3.93e-01 | 70.4% | 87.5% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 51.0 | 4.93e-01 | 100.0% | 86.6% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 44.0 | 3.64e-01 | 80.3% | 74.4% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 34.0 | 4.09e-01 | 87.3% | 100.0% |
| 2ewtA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 49.0 | 4.91e-01 | 97.2% | 100.0% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 36.0 | 3.19e-01 | 87.3% | 41.3% |
| 3cdlA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 37.0 | 4.04e-01 | 80.3% | 83.3% |
| 1r69A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 45.0 | 4.73e-01 | 94.4% | 100.0% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.58 | 49.0 | 4.82e-01 | 97.2% | 94.9% |
| 4krdB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 47.0 | 3.59e-01 | 95.8% | 44.2% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 38.0 | 3.51e-01 | 93.0% | 51.6% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 36.0 | 4.01e-01 | 87.3% | 90.0% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.97e-01 | 94.4% | 77.8% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 42.0 | 3.62e-01 | 83.1% | 78.3% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.70e-01 | 85.9% | 63.7% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 36.0 | 3.39e-01 | 93.0% | 51.6% |
| 3hwrA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 41.0 | 3.52e-01 | 85.9% | 76.7% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 48.0 | 4.30e-01 | 100.0% | 97.0% |
| 3jcmN05 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.54 | 39.0 | 4.17e-01 | 95.8% | 98.2% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.71e-01 | 85.9% | 65.5% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 34.0 | 3.42e-01 | 94.4% | 61.8% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 34.0 | 3.67e-01 | 97.2% | 78.7% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 44.0 | 3.66e-01 | 100.0% | 73.0% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.49e-01 | 94.4% | 60.7% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 41.0 | 3.78e-01 | 97.2% | 74.5% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 42.0 | 3.53e-01 | 97.2% | 68.1% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.51 | 41.0 | 4.04e-01 | 100.0% | 88.2% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.50 | 35.0 | 2.96e-01 | 80.3% | 39.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929083 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.65 | 56.0 | 5.54e-01 | 100.0% | 100.0% |
| 3708827 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 48.0 | 3.67e-01 | 81.7% | 62.9% |
| 2392399 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.63 | 52.0 | 5.22e-01 | 94.4% | 94.4% |
| 3534849 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.62 | 45.0 | 3.94e-01 | 80.3% | 84.3% |
| 160875 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.59 | 49.0 | 4.91e-01 | 97.2% | 100.0% |
| 1320273 | 101.1.10.11 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin | 0.58 | 43.0 | 3.79e-01 | 80.3% | 86.2% |
| 4978391 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.58 | 40.0 | 3.59e-01 | 71.8% | 86.0% |
| 3288109 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.58 | 46.0 | 4.71e-01 | 100.0% | 94.3% |
| 4678741 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.58 | 49.0 | 4.85e-01 | 100.0% | 96.0% |
| 4992320 | 5069.1.1.26 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › NrfD | 0.57 | 41.0 | 3.65e-01 | 77.5% | 87.3% |
| 2842 | 101.1.10.10 ↗ | alpha arrays › HTH › HTH › Cyclin-like › K-cyclin_vir_C | 0.57 | 42.0 | 3.79e-01 | 80.3% | 89.1% |
| 5069733 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.57 | 48.0 | 3.27e-01 | 100.0% | 79.7% |
| 4932829 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.56 | 37.0 | 2.95e-01 | 87.3% | 32.4% |
| 3271883 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 4.09e-01 | 81.7% | 86.3% |
| 4999897 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 48.0 | 4.74e-01 | 100.0% | 97.3% |
| 4498619 | 101.1.2.837 ↗ | alpha arrays › HTH › HTH › winged helix domain › Lin1244_N | 0.56 | 43.0 | 3.58e-01 | 90.1% | 46.9% |
| 3944885 | 101.1.1.355 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF2857 | 0.55 | 37.0 | 3.87e-01 | 81.7% | 76.9% |
| 4992012 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 38.0 | 4.01e-01 | 84.5% | 86.7% |
| 3924925 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 45.0 | 3.93e-01 | 95.8% | 70.4% |
| 3518336 | 2004.5.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › PF27109 | 0.54 | 38.0 | 2.73e-01 | 84.5% | 25.5% |
| 2511579 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.53 | 37.0 | 3.53e-01 | 94.4% | 60.0% |
| 4944587 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 43.0 | 3.91e-01 | 97.2% | 69.5% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 43.0 | 3.98e-01 | 97.2% | 73.0% |
| 4989919 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.51 | 43.0 | 2.70e-01 | 93.0% | 16.7% |
| 4998595 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.51 | 41.0 | 2.74e-01 | 91.5% | 66.9% |
| 3715040 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.51 | 39.0 | 2.56e-01 | 84.5% | 63.1% |
| 3392986 | 632.1.1.19 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › RH_dom | 0.50 | 37.0 | 3.42e-01 | 81.7% | 74.0% |