Back to structures

MN857473.1__QOC54159.1__X__00044

Bact-Vir

MN857473.1__QOC54159.1__X__00044

Identity

Accession:
MN857473 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 4.97e-01 88.7% 57.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.00e-01 88.7% 67.0%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.22e-01 88.7% 91.2%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.93e-01 88.7% 66.0%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 39.0 3.74e-01 76.2% 52.2%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.73e-01 88.7% 70.9%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.63 48.0 4.71e-01 90.0% 75.9%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 5.02e-01 93.8% 90.1%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 50.0 4.85e-01 90.0% 84.4%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.60 48.0 4.12e-01 88.7% 83.0%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 4.13e-01 82.5% 97.3%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 3.60e-01 76.2% 54.1%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 42.0 3.55e-01 76.2% 75.4%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 35.0 3.40e-01 75.0% 53.3%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.89e-01 77.5% 98.0%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.56 44.0 4.41e-01 87.5% 87.1%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 45.0 3.33e-01 88.7% 35.6%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.69e-01 80.0% 87.3%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.72e-01 73.8% 83.3%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 41.0 3.53e-01 78.8% 49.6%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 37.0 3.16e-01 77.5% 40.1%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.44e-01 78.8% 73.9%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.55 41.0 3.81e-01 80.0% 66.0%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.40e-01 77.5% 76.9%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 43.0 3.75e-01 88.7% 56.2%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 40.0 3.58e-01 80.0% 88.2%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.53e-01 77.5% 59.4%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.66e-01 81.2% 98.2%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.53 31.0 3.34e-01 76.2% 65.7%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.42e-01 81.2% 65.4%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 41.0 3.93e-01 88.7% 80.8%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 3.20e-01 88.7% 42.4%
6iy8A01 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.52 44.0 3.44e-01 98.8% 65.6%
3k3dA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 38.0 3.33e-01 78.8% 78.6%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.51 41.0 3.08e-01 91.3% 84.2%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 35.0 2.98e-01 72.5% 92.6%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.51 39.0 3.65e-01 83.7% 67.0%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 40.0 3.34e-01 91.3% 72.8%
4mt1A03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.51 36.0 3.43e-01 76.2% 62.2%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 36.0 3.70e-01 77.5% 89.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971747 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.77 61.0 5.44e-01 88.7% 60.9%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 4.54e-01 90.0% 37.8%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.74 60.0 4.50e-01 90.0% 36.8%
5066425 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.74 42.0 4.24e-01 76.2% 56.2%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.74 61.0 4.57e-01 90.0% 38.4%
None 0.74 60.0 4.51e-01 90.0% 37.8%
3762681 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.70 61.0 5.19e-01 96.2% 60.0%
4580987 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.70 51.0 4.00e-01 75.0% 100.0%
5059461 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.70 55.0 4.71e-01 88.7% 53.6%
4948149 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 4.89e-01 88.7% 60.9%
3501316 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.69 58.0 5.26e-01 92.5% 69.1%
4945332 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.69 49.0 4.08e-01 75.0% 99.3%
3983446 101.1.2.84 alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA 0.69 55.0 5.13e-01 87.5% 72.0%
3483770 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.69 58.0 4.55e-01 92.5% 45.5%
3840294 101.1.2.664 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC, WH_GTF3C1_N 0.68 61.0 3.95e-01 100.0% 47.5%
3727445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.01e-01 87.5% 68.6%
5066984 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.68 54.0 5.43e-01 88.7% 86.3%
4941839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 4.53e-01 90.0% 51.7%
4620040 101.1.2.187 alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.67 53.0 4.93e-01 88.7% 77.1%
4943632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 4.47e-01 88.7% 55.0%
4538612 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.66 54.0 3.44e-01 87.5% 18.7%
3821254 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.66 54.0 4.61e-01 88.7% 64.0%
3181301 101.1.2.569 alpha arrays › HTH › HTH › winged helix domain › PF28722 0.65 54.0 4.51e-01 92.5% 58.6%
4958255 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.65 48.0 3.83e-01 78.8% 100.0%
4948237 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.65 47.0 3.94e-01 76.2% 99.3%
3738674 101.1.2.207 alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.64 53.0 4.84e-01 92.5% 79.1%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 51.0 4.73e-01 88.7% 70.9%
3964912 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 36.0 3.77e-01 77.5% 60.8%
3200378 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.67e-01 87.5% 72.0%
4980535 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.62 46.0 4.41e-01 88.7% 67.4%
2718723 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.62 39.0 4.12e-01 77.5% 70.8%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.27e-01 87.5% 63.2%
5005033 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.62 38.0 3.90e-01 75.0% 62.5%
5080275 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.62 45.0 4.04e-01 90.0% 53.3%
5025980 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.59 45.0 4.33e-01 90.0% 71.1%
4017873 327.11.2.40 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 0.59 37.0 3.84e-01 73.8% 67.1%
3586334 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 40.0 3.92e-01 75.0% 63.3%
3479702 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.58 37.0 3.48e-01 77.5% 49.5%
5026790 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.58 48.0 4.48e-01 90.0% 79.0%
3389626 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.58 36.0 3.71e-01 72.5% 65.3%
5053097 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 38.0 3.60e-01 77.5% 55.8%
3935690 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.57 46.0 3.90e-01 86.3% 68.5%
4968266 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.56 41.0 3.93e-01 80.0% 84.0%
4614530 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.56 42.0 3.65e-01 78.8% 60.0%
4979177 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.56 45.0 4.27e-01 90.0% 77.0%
4071803 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.56 40.0 3.07e-01 76.2% 47.9%
3889516 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.55 46.0 4.30e-01 96.2% 87.6%
5065326 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 43.0 4.16e-01 87.5% 82.1%
3941596 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 41.0 3.74e-01 80.0% 87.3%
4024947 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.99e-01 91.3% 82.6%
2056822 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.55 41.0 4.20e-01 82.5% 86.8%
5059094 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 41.0 3.46e-01 85.0% 84.0%
5040946 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.54 39.0 3.88e-01 90.0% 74.1%
4233442 304.4.1.54 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.53 38.0 3.35e-01 76.2% 50.0%
4127225 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.53 40.0 3.61e-01 82.5% 64.3%
4464468 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.52 40.0 3.64e-01 82.5% 66.4%
3940439 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 35.0 2.40e-01 71.2% 96.0%
5033448 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.52 39.0 3.79e-01 80.0% 86.7%
4028991 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.61e-01 83.7% 23.2%
4223968 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.52 39.0 3.97e-01 81.2% 96.2%
3945562 1.1.7.111 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › T6SS_TssF 0.52 40.0 3.61e-01 85.0% 73.9%
4379320 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.51 38.0 3.53e-01 81.2% 75.2%
3499933 273.1.1.0 a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.50 34.0 2.94e-01 78.8% 42.3%
3734046 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.50 42.0 2.78e-01 96.2% 81.4%
3381094 304.8.1.64 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P 0.50 39.0 2.76e-01 88.7% 70.0%