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MN862068.1__QHJ75297.1__DELTA_104__00104
Bact-VirMN862068.1__QHJ75297.1__DELTA_104__00104
Identity
- Accession:
- MN862068 ↗
- Kingdom:
- phage
Quality
62.4
mean pLDDT
Taxonomy
TaxID: 2696338
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-45
D2
high
residues 180-266
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.70 | 49.0 | 4.76e-01 | 71.3% | 76.6% |
| 1h3lB00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 46.0 | 4.83e-01 | 71.3% | 93.6% |
| 1nxhA00 | 1.10.3070.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein MTH393 › EhaM-like | 0.61 | 45.0 | 4.02e-01 | 78.2% | 58.1% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 45.0 | 4.28e-01 | 81.6% | 78.4% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.57 | 40.0 | 4.03e-01 | 73.6% | 77.9% |
| 3aq1B02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.55 | 38.0 | 3.60e-01 | 73.6% | 75.5% |
| 2wtbA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 35.0 | 2.55e-01 | 71.3% | 69.6% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 37.0 | 3.30e-01 | 77.0% | 97.7% |
| 3n00A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 41.0 | 3.26e-01 | 87.4% | 57.6% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 37.0 | 3.02e-01 | 79.3% | 95.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3958582 | 101.1.1.282 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF222 | 0.64 | 45.0 | 3.77e-01 | 72.4% | 85.3% |
| 3960065 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.64 | 52.0 | 4.84e-01 | 86.2% | 81.0% |
| 4814 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.59 | 48.0 | 4.41e-01 | 88.5% | 72.6% |
| 3519127 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.59 | 46.0 | 4.80e-01 | 82.8% | 97.5% |
| 3286576 | 206.1.3.15 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Lant_dehydr_N | 0.54 | 37.0 | 2.33e-01 | 70.1% | 83.3% |
| 4680462 | 3281.1.2.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | 0.54 | 37.0 | 2.33e-01 | 71.3% | 22.0% |
| 5054652 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.50 | 43.0 | 2.85e-01 | 94.3% | 84.4% |
D3
medium
residues 135-174
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gv2A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.82 | 65.0 | 6.31e-01 | 90.0% | 91.3% |
| 5hs7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 70.0 | 5.22e-01 | 100.0% | 55.1% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 69.0 | 5.59e-01 | 100.0% | 76.0% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 68.0 | 5.15e-01 | 100.0% | 67.4% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 66.0 | 5.24e-01 | 100.0% | 69.5% |
| 1ignB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 65.0 | 4.98e-01 | 100.0% | 87.0% |
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 51.0 | 4.92e-01 | 72.5% | 63.0% |
| 1wgxA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 56.0 | 4.80e-01 | 92.5% | 63.0% |
| 1eg7A02 | 3.30.1510.10 | Alpha Beta › 2-Layer Sandwich › Domain 2, N(10)-formyltetrahydrofolate synthetase › Domain 2, N(10)-formyltetrahydrofolate synthetase | 0.72 | 50.0 | 3.65e-01 | 75.0% | 40.3% |
| 4nmyA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.72 | 57.0 | 3.71e-01 | 92.5% | 72.1% |
| 2doaA00 | 1.10.10.2670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase | 0.72 | 59.0 | 4.49e-01 | 100.0% | 47.1% |
| 5y9sC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 58.0 | 4.74e-01 | 100.0% | 64.6% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 55.0 | 4.48e-01 | 100.0% | 60.0% |
| 2istA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.69 | 60.0 | 4.94e-01 | 100.0% | 73.6% |
| 4rayA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 4.39e-01 | 97.5% | 76.5% |
| 2hoeA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 55.0 | 5.05e-01 | 100.0% | 89.7% |
| 2iw5B00 | 1.20.58.1880 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 52.0 | 3.76e-01 | 95.0% | 35.3% |
| 1rz4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.24e-01 | 100.0% | 51.1% |
| 4ociA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 54.0 | 4.50e-01 | 97.5% | 71.2% |
| 6hxpA01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.64 | 45.0 | 3.45e-01 | 75.0% | 31.3% |
| 3mq0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 4.23e-01 | 100.0% | 70.1% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.63 | 47.0 | 2.94e-01 | 80.0% | 61.9% |
| 2yjgA01 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.62 | 44.0 | 2.93e-01 | 75.0% | 73.0% |
| 3a1yA00 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 46.0 | 4.30e-01 | 92.5% | 75.9% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.59e-01 | 97.5% | 86.5% |
| 3n8hA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 50.0 | 3.33e-01 | 100.0% | 37.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938254 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 76.0 | 6.25e-01 | 97.5% | 58.6% |
| 3773454 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 66.0 | 5.98e-01 | 92.5% | 80.0% |
| 3783341 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 66.0 | 6.40e-01 | 92.5% | 86.7% |
| 3635557 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.81 | 57.0 | 4.96e-01 | 75.0% | 58.3% |
| 4003410 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.81 | 70.0 | 4.95e-01 | 100.0% | 41.7% |
| 3790320 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.80 | 68.0 | 5.89e-01 | 100.0% | 76.9% |
| 4429289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 69.0 | 5.09e-01 | 100.0% | 51.4% |
| 4944823 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 68.0 | 5.72e-01 | 100.0% | 80.0% |
| 5074582 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 66.0 | 5.26e-01 | 100.0% | 56.5% |
| 4948721 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 68.0 | 6.02e-01 | 100.0% | 91.4% |
| 3243688 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.77 | 62.0 | 5.72e-01 | 95.0% | 85.5% |
| 5079768 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 69.0 | 5.36e-01 | 100.0% | 66.7% |
| 3914141 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 61.0 | 5.59e-01 | 92.5% | 80.0% |
| 5034425 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 65.0 | 5.15e-01 | 100.0% | 52.9% |
| 5010525 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 66.0 | 5.31e-01 | 100.0% | 62.0% |
| 3726460 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 63.0 | 5.56e-01 | 95.0% | 78.3% |
| 3986709 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 63.0 | 5.59e-01 | 100.0% | 76.7% |
| 5066321 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 62.0 | 4.90e-01 | 100.0% | 55.6% |
| 5044182 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 62.0 | 4.95e-01 | 100.0% | 60.0% |
| 3785702 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.73 | 59.0 | 5.14e-01 | 100.0% | 77.1% |
| 3687749 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.73 | 58.0 | 5.20e-01 | 100.0% | 81.5% |
| 4010023 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 59.0 | 5.10e-01 | 95.0% | 75.4% |
| 5023037 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.72 | 60.0 | 4.80e-01 | 100.0% | 58.8% |
| 3789335 | 101.1.2.132 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF3591 | 0.72 | 59.0 | 4.77e-01 | 100.0% | 64.7% |
| 4961280 | 101.1.2.939 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26270 | 0.71 | 57.0 | 5.08e-01 | 100.0% | 64.6% |
| 3426542 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.69 | 58.0 | 4.73e-01 | 100.0% | 70.0% |
| 3483712 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 52.0 | 4.76e-01 | 95.0% | 78.3% |
| 4929481 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.64 | 54.0 | 4.41e-01 | 100.0% | 57.5% |
| 4955311 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.64 | 52.0 | 3.95e-01 | 100.0% | 36.2% |
| 3944915 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.56 | 46.0 | 2.87e-01 | 97.5% | 58.4% |