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QJF12430.1

Arc-Vir

MN876845__QJF12430.1__PSV2-gp18__00018

Identity

Accession:
MN876845 ↗
Protein ID:
QJF12430.1 ↗
Kingdom:
archaea

Quality

77.3 mean pLDDT

Taxonomy

Globuloviridae› Alphaglobulovirus› Pyrobaculum_spherical_virus_2

TaxID: 2730632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-72
PDB
Domain cluster: rep: MH744418.1__AYD81209.1__SEA_JUSTBECAUSE_40__00040__D10-82
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.74 43.0 2.74e-01 100.0% 13.4%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.70 61.0 5.17e-01 100.0% 91.0%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 60.0 5.40e-01 100.0% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 43.0 3.82e-01 93.2% 45.8%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 41.0 2.53e-01 100.0% 10.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.35e-01 100.0% 65.1%
1n9pA00 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.66 54.0 3.84e-01 94.9% 48.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.65 45.0 4.33e-01 71.2% 68.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.25e-01 100.0% 60.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.08e-01 100.0% 60.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.22e-01 100.0% 65.1%
3rleA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.64 55.0 4.63e-01 100.0% 58.7%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.64 33.0 3.77e-01 84.7% 65.1%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.09e-01 100.0% 62.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.13e-01 100.0% 66.1%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 41.0 4.17e-01 100.0% 69.5%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 49.0 4.14e-01 89.8% 70.2%
1rypC00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 51.0 3.50e-01 98.3% 82.0%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 50.0 3.17e-01 94.9% 61.3%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 46.0 3.68e-01 86.4% 63.8%
4edjA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 51.0 4.42e-01 100.0% 60.2%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 3.94e-01 88.1% 61.0%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 2.51e-01 74.6% 41.5%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.71e-01 86.4% 61.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 36.0 3.76e-01 93.2% 67.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.55 45.0 3.23e-01 98.3% 41.8%
3k85A00 3.30.230.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 37.0 2.46e-01 74.6% 34.3%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.54 43.0 3.72e-01 93.2% 67.3%
2e1qC01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.54 46.0 4.06e-01 100.0% 80.4%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.38e-01 88.1% 62.4%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.40e-01 86.4% 65.8%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 43.0 3.86e-01 96.6% 84.0%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 36.0 3.12e-01 72.9% 86.1%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 2.97e-01 78.0% 73.7%
3hnoA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 2.94e-01 94.9% 82.4%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.40e-01 96.6% 42.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.52 32.0 3.46e-01 88.1% 72.9%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 39.0 3.69e-01 94.9% 68.4%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.46e-01 86.4% 65.3%
2f20A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.51 40.0 2.90e-01 100.0% 74.7%
6rzqA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.50 34.0 3.14e-01 94.9% 50.6%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 40.0 3.29e-01 89.8% 94.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028523 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.71 63.0 5.38e-01 100.0% 95.8%
3403311 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.71 62.0 5.23e-01 100.0% 91.0%
4515154 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.70 45.0 3.61e-01 100.0% 33.9%
5024676 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.66 59.0 4.93e-01 100.0% 75.0%
3411035 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 35.0 4.31e-01 86.4% 100.0%
3948318 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 52.0 3.71e-01 91.5% 53.8%
3626118 7.1.1.4 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 0.64 55.0 4.41e-01 100.0% 50.8%
3289594 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 51.0 3.79e-01 91.5% 57.0%
3959055 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 48.0 4.69e-01 84.7% 100.0%
3287194 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 50.0 3.66e-01 91.5% 60.6%
4562453 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.62 54.0 4.57e-01 100.0% 67.0%
1281431 7.1.1.4 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 0.62 52.0 4.41e-01 100.0% 55.2%
3445449 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.62 49.0 3.87e-01 100.0% 40.0%
3788897 309.1.1.2 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.61 49.0 2.70e-01 89.8% 15.8%
167841 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.61 37.0 3.72e-01 98.3% 60.0%
3977037 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.60 52.0 4.31e-01 100.0% 60.9%
3924126 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.12e-01 88.1% 60.0%
5005268 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 43.0 3.61e-01 76.3% 87.0%
3641871 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 48.0 3.58e-01 93.2% 43.1%
3500755 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.59 41.0 2.84e-01 100.0% 21.0%
3637297 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 48.0 3.45e-01 94.9% 94.6%
5036230 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 4.14e-01 86.4% 68.8%
4161981 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.58 41.0 2.66e-01 76.3% 62.3%
3286318 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 48.0 3.58e-01 96.6% 58.2%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 50.0 4.21e-01 96.6% 71.0%
3821886 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 42.0 3.89e-01 100.0% 61.3%
3595649 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 46.0 3.08e-01 91.5% 93.1%
4105457 11.1.1.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IalB 0.57 45.0 3.40e-01 86.4% 43.4%
4988260 268.2.1.0 ↗ a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes 0.57 47.0 3.18e-01 100.0% 25.1%
3770806 220.1.1.119 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.57 40.0 3.16e-01 100.0% 37.3%
3778104 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 42.0 3.57e-01 86.4% 49.0%
3998976 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.55 39.0 4.21e-01 88.1% 100.0%
None — 0.55 46.0 2.85e-01 100.0% 16.1%
3641506 3957.1.1.0 ↗ a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.54 43.0 3.84e-01 100.0% 61.2%
3933398 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.63e-01 86.4% 63.2%
3551009 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 41.0 2.77e-01 100.0% 22.8%
3508385 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 2.71e-01 86.4% 98.4%
3780755 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 40.0 2.72e-01 100.0% 22.3%
None — 0.52 36.0 2.48e-01 76.3% 76.0%
3290861 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 40.0 3.24e-01 91.5% 62.3%
3578813 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.85e-01 88.1% 90.0%