←Back to structures

QJF12444.1

Arc-Vir

MN876845__QJF12444.1__PSV2-gp32__00032

Identity

Accession:
MN876845 ↗
Protein ID:
QJF12444.1 ↗
Kingdom:
archaea

Quality

61.2 mean pLDDT

Taxonomy

Globuloviridae› Alphaglobulovirus› Pyrobaculum_spherical_virus_2

TaxID: 2730632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-153
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.65e-01 96.6% 82.2%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.70 59.0 5.53e-01 93.2% 87.0%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 5.15e-01 95.5% 90.7%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.67e-01 94.3% 71.3%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.07e-01 93.2% 75.5%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.25e-01 94.3% 56.4%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 54.0 5.49e-01 100.0% 96.6%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.94e-01 96.6% 85.7%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 49.0 4.83e-01 94.3% 80.0%
8cuyA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.60 43.0 4.65e-01 75.0% 93.2%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 45.0 4.45e-01 97.7% 80.9%
6i2mB02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.56 42.0 3.79e-01 96.6% 58.2%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.08e-01 100.0% 76.1%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.55 48.0 4.37e-01 100.0% 86.2%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.55 45.0 4.54e-01 95.5% 92.0%
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 42.0 4.24e-01 85.2% 100.0%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.53 42.0 4.38e-01 92.0% 96.2%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.52 39.0 3.57e-01 83.0% 66.9%
1t9xA05 1.20.1640.10 Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain 0.52 45.0 3.42e-01 100.0% 59.0%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 36.0 3.97e-01 75.0% 91.5%
4if8B01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.50 43.0 3.16e-01 98.9% 96.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3701431 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.73 65.0 5.22e-01 100.0% 50.6%
3995560 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 5.83e-01 100.0% 91.1%
3475579 101.1.2.45 ↗ alpha arrays › HTH › HTH › winged helix domain › SAC3_GANP 0.69 47.0 4.50e-01 92.0% 61.0%
5046136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.88e-01 100.0% 60.0%
4965088 101.1.2.909 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF5797 0.66 48.0 4.90e-01 93.2% 80.0%
4560206 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.65 50.0 5.06e-01 96.6% 83.3%
137167 101.1.2.230 ↗ alpha arrays › HTH › HTH › winged helix domain › PSV_trans_reg_dom 0.65 54.0 5.46e-01 97.7% 94.3%
3713916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.09e-01 90.9% 80.0%
3583002 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.64 47.0 5.16e-01 95.5% 98.6%
3704256 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 5.23e-01 100.0% 95.0%
3274016 101.1.2.393 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_MCM2 0.63 51.0 5.28e-01 96.6% 97.5%
3857980 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 54.0 5.13e-01 100.0% 85.3%
3409254 101.1.2.393 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_MCM2 0.62 50.0 5.18e-01 96.6% 96.2%
4232234 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.62 55.0 4.32e-01 100.0% 70.5%
3972365 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.31e-01 100.0% 73.0%
3515401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.91e-01 100.0% 76.7%
4310372 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.60 52.0 4.19e-01 100.0% 72.4%
3713917 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.60 51.0 4.04e-01 98.9% 68.5%
3620303 101.1.1.66 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.60 43.0 4.70e-01 77.3% 100.0%
3705193 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.97e-01 90.9% 95.3%
4436486 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 3.39e-01 97.7% 86.5%
3843442 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.58 51.0 4.57e-01 98.9% 71.2%
3887336 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.58 51.0 3.85e-01 100.0% 39.1%
4071682 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 50.0 4.02e-01 100.0% 72.4%
4991879 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.60e-01 95.5% 80.0%
4019500 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.57 41.0 3.99e-01 76.1% 71.0%
4955372 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.57e-01 100.0% 79.1%
3694079 101.1.2.290 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3759 0.55 47.0 4.34e-01 100.0% 74.2%
3740294 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.54 45.0 3.80e-01 93.2% 73.3%
3594815 3345.1.1.0 ↗ alpha arrays › MRG domain › MRG domain › MRG domain 0.53 45.0 3.52e-01 94.3% 66.3%
3406182 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 45.0 4.24e-01 97.7% 99.1%
3700362 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 44.0 4.33e-01 100.0% 90.9%
4991910 5067.1.1.4 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL 0.51 44.0 3.08e-01 100.0% 92.3%
D2 medium residues 1-56
PDB