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MN877442.1__QHZ59771.1__X__00090

Bact-Vir

MN877442.1__QHZ59771.1__X__00090

Identity

Accession:
MN877442 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myoalterovirus› Alteromonas_phage_vB_AmeM_PT11-V22

TaxID: 2704031

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-94
PDB
Domain cluster: rep: KX507046.1__AOQ26777.1__X__00052__D9-78
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 30.0 3.48e-01 83.1% 60.0%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.63 33.0 4.17e-01 98.7% 92.7%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 35.0 3.81e-01 85.7% 70.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 33.0 3.55e-01 83.1% 62.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 29.0 3.26e-01 83.1% 56.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 27.0 2.85e-01 80.5% 45.7%
1sulB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.64e-01 100.0% 76.9%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.55 47.0 3.33e-01 100.0% 37.7%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 46.0 3.28e-01 100.0% 41.3%
2yogA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.54e-01 100.0% 86.8%
2wnhA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 46.0 3.01e-01 100.0% 84.7%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.53 37.0 3.01e-01 76.6% 46.7%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.53 31.0 3.58e-01 80.5% 83.3%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.50 31.0 3.61e-01 96.1% 86.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
665 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 33.0 3.55e-01 83.1% 61.2%
5019906 3457.1.1.3 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.57 41.0 2.97e-01 77.9% 77.6%
4081305 2004.1.1.28 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.53 44.0 3.35e-01 92.2% 70.0%
3638653 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.53 47.0 3.21e-01 100.0% 93.5%
3779769 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.53 46.0 3.17e-01 100.0% 79.6%
4150547 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.53 40.0 3.78e-01 100.0% 67.4%
3685788 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.53 46.0 3.15e-01 100.0% 91.9%
D2 high residues 111-185
PDB
Domain cluster: rep: SRR1747057_scaffold_1_prodigal-single.1__X__X__00254__D3-76
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 50.0 4.16e-01 93.3% 99.3%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.57 29.0 3.22e-01 72.0% 57.4%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 48.0 3.87e-01 94.7% 48.0%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.56 41.0 4.31e-01 80.0% 87.9%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 47.0 3.99e-01 93.3% 61.3%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 32.0 3.51e-01 76.0% 74.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.90e-01 92.0% 68.5%
5llyA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 3.09e-01 89.3% 89.2%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.56e-01 82.7% 74.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3654117 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.59 46.0 3.90e-01 85.3% 100.0%
406956 392.1.1.1 ↗ beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A 0.59 31.0 3.39e-01 73.3% 58.1%
3659318 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.54 43.0 3.90e-01 88.0% 98.1%
3426514 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.52 38.0 3.52e-01 80.0% 92.0%
4962282 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 41.0 3.15e-01 92.0% 63.6%