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MN877442.1__QHZ59791.1__X__00127

Bact-Vir

MN877442.1__QHZ59791.1__X__00127

Identity

Accession:
MN877442 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myoalterovirus› Alteromonas_phage_vB_AmeM_PT11-V22

TaxID: 2704031

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-59
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bu8A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.65 43.0 3.52e-01 70.6% 100.0%
3e0jA01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.65 46.0 2.91e-01 78.4% 94.6%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.64 43.0 3.15e-01 70.6% 32.1%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.94e-01 86.3% 88.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.36e-01 84.3% 72.2%
5c33A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.63 44.0 3.04e-01 74.5% 56.1%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.41e-01 100.0% 31.0%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.74e-01 86.3% 82.7%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 52.0 4.63e-01 96.1% 64.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 45.0 4.74e-01 84.3% 87.0%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 46.0 3.59e-01 86.3% 50.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.22e-01 86.3% 71.2%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.50e-01 86.3% 50.8%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.59 50.0 3.34e-01 94.1% 63.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.39e-01 84.3% 76.8%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.59 48.0 4.24e-01 96.1% 95.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.01e-01 86.3% 65.8%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 3.46e-01 86.3% 50.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 3.88e-01 84.3% 69.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.13e-01 84.3% 82.3%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.98e-01 88.2% 74.0%
3h5nD02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 41.0 2.65e-01 78.4% 35.4%
5wcmA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 44.0 2.84e-01 90.2% 86.3%
5ff5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 40.0 2.62e-01 78.4% 35.3%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.56 40.0 3.93e-01 84.3% 70.2%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.56 45.0 3.72e-01 96.1% 96.0%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 41.0 2.91e-01 80.4% 84.0%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.24e-01 80.4% 66.1%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.19e-01 84.3% 89.7%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.39e-01 86.3% 68.6%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 3.68e-01 84.3% 74.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 3.98e-01 84.3% 83.1%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.06e-01 86.3% 79.3%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 3.79e-01 82.4% 85.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 3.75e-01 86.3% 75.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 3.85e-01 84.3% 79.7%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 43.0 3.18e-01 100.0% 64.4%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.29e-01 88.2% 62.4%
1lbvA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 43.0 3.22e-01 92.2% 39.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 3.56e-01 86.3% 66.7%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.53 41.0 3.12e-01 90.2% 86.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 3.76e-01 82.4% 86.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 3.77e-01 82.4% 89.7%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 3.08e-01 80.4% 92.4%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 2.96e-01 88.2% 68.8%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4076295 375.1.1.88 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.76 58.0 5.72e-01 82.4% 80.0%
5068435 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.76 61.0 6.05e-01 92.2% 90.9%
4995512 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.72 61.0 5.84e-01 98.0% 90.0%
5044773 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.72 61.0 6.15e-01 96.1% 100.0%
3501741 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.70 54.0 5.20e-01 86.3% 81.7%
4949552 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 56.0 5.02e-01 86.3% 68.6%
2389474 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.69 59.0 5.67e-01 100.0% 100.0%
5030227 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.69 55.0 5.47e-01 94.1% 100.0%
5027812 375.1.1.5 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L44 0.67 51.0 4.18e-01 82.4% 83.9%
2816341 375.1.1.189 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EcdD_BsdD_detox 0.67 49.0 4.61e-01 92.2% 65.1%
3277727 4.8.1.43 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.67 52.0 4.27e-01 86.3% 63.2%
5049449 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 49.0 4.98e-01 84.3% 92.0%
None — 0.63 44.0 2.77e-01 86.3% 13.7%
4928794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.88e-01 82.4% 100.0%
4427723 375.1.1.145 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FdhE_C 0.63 51.0 4.51e-01 94.1% 97.5%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 48.0 4.10e-01 86.3% 60.0%
4882650 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.61 43.0 2.71e-01 86.3% 13.9%
5075670 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 45.0 4.82e-01 82.4% 97.7%
3790784 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 42.0 2.76e-01 80.4% 14.7%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.60 47.0 3.73e-01 84.3% 43.8%
3886850 387.1.1.10 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.60 44.0 3.64e-01 80.4% 49.0%
4157035 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 46.0 3.44e-01 86.3% 45.2%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.16e-01 84.3% 70.0%
3494671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.17e-01 78.4% 80.0%
3701501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 50.0 4.62e-01 94.1% 92.3%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.29e-01 86.3% 88.3%
3538297 375.1.1.191 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF 0.59 43.0 3.57e-01 80.4% 50.5%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.58 44.0 3.46e-01 86.3% 39.2%
3506500 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 39.0 4.13e-01 78.4% 83.7%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.08e-01 84.3% 76.9%
4463837 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.58 44.0 3.57e-01 84.3% 42.9%
3773038 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 42.0 4.45e-01 86.3% 91.1%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.57 43.0 4.01e-01 86.3% 64.3%
3768832 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.57 38.0 3.82e-01 76.5% 67.3%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 42.0 4.06e-01 86.3% 70.7%
3918564 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 42.0 3.87e-01 86.3% 77.3%
3413048 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 42.0 2.51e-01 88.2% 21.2%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.03e-01 84.3% 83.1%
4003123 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 43.0 4.03e-01 84.3% 78.5%
3205488 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 42.0 2.82e-01 86.3% 46.4%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 42.0 4.05e-01 82.4% 85.0%
None — 0.56 43.0 2.60e-01 86.3% 42.7%
3503771 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 43.0 4.01e-01 84.3% 78.5%
3498357 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 42.0 3.84e-01 82.4% 72.9%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 42.0 3.50e-01 84.3% 53.0%
3652288 145.1.1.50 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 0.56 44.0 2.79e-01 94.1% 30.2%
3846212 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 41.0 3.70e-01 84.3% 63.7%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 42.0 3.56e-01 84.3% 58.9%
3538030 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 42.0 3.85e-01 84.3% 75.7%
3474075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.86e-01 84.3% 74.3%
3627914 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 43.0 3.59e-01 90.2% 63.0%
4374423 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 42.0 3.23e-01 88.2% 68.1%
3221919 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.55 46.0 2.79e-01 100.0% 80.3%
3914462 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 41.0 3.56e-01 86.3% 64.4%
1824182 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 41.0 3.68e-01 84.3% 74.0%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 40.0 3.43e-01 82.4% 62.2%
3894798 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.54 40.0 4.24e-01 82.4% 97.8%
3196814 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 43.0 2.60e-01 94.1% 24.3%
3476188 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 39.0 3.58e-01 84.3% 69.3%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.81e-01 84.3% 88.3%
3842631 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.53 40.0 3.71e-01 84.3% 67.1%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.53 39.0 3.64e-01 84.3% 65.7%
3925642 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 39.0 3.30e-01 84.3% 54.0%
4975612 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.52 41.0 3.09e-01 92.2% 37.9%
3416133 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 39.0 3.53e-01 84.3% 69.3%
4517523 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.52 39.0 3.20e-01 82.4% 44.0%
4933900 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.52 40.0 3.03e-01 92.2% 40.0%