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MN877442.1__QHZ59861.1__X__00131

Bact-Vir

MN877442.1__QHZ59861.1__X__00131

Identity

Accession:
MN877442 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.72 55.0 5.26e-01 85.5% 71.8%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 56.0 4.29e-01 100.0% 60.2%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.64 55.0 4.98e-01 100.0% 82.6%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.64 55.0 4.75e-01 100.0% 84.3%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 50.0 4.89e-01 91.9% 100.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 50.0 4.85e-01 91.9% 100.0%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.63 48.0 3.75e-01 83.9% 59.9%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 53.0 5.26e-01 98.4% 98.5%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 50.0 4.48e-01 95.2% 76.6%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 51.0 4.87e-01 98.4% 97.3%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.61 43.0 4.09e-01 75.8% 88.0%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 46.0 3.95e-01 82.3% 76.0%
5mrvA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 51.0 3.36e-01 100.0% 23.5%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 49.0 4.82e-01 100.0% 98.6%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.32e-01 77.4% 67.4%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.42e-01 79.0% 46.5%
2z17A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 41.0 3.69e-01 77.4% 93.6%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 42.0 3.45e-01 80.6% 72.2%
3dohA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 42.0 2.92e-01 83.9% 28.3%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 40.0 3.22e-01 77.4% 57.5%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.41e-01 96.8% 42.6%
1jqgA02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 47.0 3.11e-01 100.0% 23.6%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 40.0 3.14e-01 77.4% 55.9%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.56 45.0 3.49e-01 95.2% 38.6%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 46.0 3.70e-01 100.0% 78.0%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 38.0 3.23e-01 74.2% 39.3%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.55 39.0 3.56e-01 77.4% 55.1%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.55 43.0 3.79e-01 91.9% 96.1%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 45.0 4.22e-01 91.9% 92.1%
1ckmA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 42.0 3.27e-01 88.7% 52.9%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 40.0 3.28e-01 83.9% 40.0%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 3.65e-01 96.8% 88.7%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 42.0 3.32e-01 85.5% 72.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 37.0 3.65e-01 75.8% 66.2%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.54 46.0 2.91e-01 100.0% 23.2%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.54 46.0 4.01e-01 98.4% 66.3%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.47e-01 95.2% 55.4%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.54 44.0 3.83e-01 95.2% 59.8%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 43.0 3.50e-01 95.2% 67.4%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.29e-01 96.8% 91.4%
1qlmA02 3.30.1030.10 Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 0.53 42.0 3.14e-01 98.4% 88.4%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 41.0 2.95e-01 96.8% 95.8%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.31e-01 77.4% 71.0%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 36.0 2.80e-01 79.0% 92.9%
1gkkA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 42.0 2.83e-01 100.0% 71.4%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 37.0 2.65e-01 82.3% 70.4%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.20e-01 77.4% 67.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3383781 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.74 51.0 5.49e-01 82.3% 90.0%
4674129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 50.0 4.13e-01 80.6% 41.9%
3625247 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.72 62.0 5.24e-01 100.0% 90.9%
119245 252.3.1.1 a+b two layers › DNA-binding domain › Uncharacterized protein yaiA › Uncharacterized protein yaiA › YaiA 0.72 55.0 5.26e-01 85.5% 71.8%
4952918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 55.0 4.83e-01 82.3% 62.2%
3221077 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 59.0 5.43e-01 93.5% 87.5%
5049605 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 53.0 5.63e-01 80.6% 94.5%
3983782 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.69 52.0 4.58e-01 82.3% 60.6%
3983036 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.69 52.0 5.15e-01 82.3% 86.2%
3608583 330.1.1.22 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.69 57.0 4.31e-01 93.5% 51.0%
3327575 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 57.0 4.93e-01 95.2% 73.0%
4952072 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.68 49.0 5.28e-01 85.5% 94.0%
3607857 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 56.0 4.92e-01 98.4% 76.0%
3253472 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 55.0 5.00e-01 95.2% 84.7%
3815823 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 53.0 4.83e-01 95.2% 85.6%
4945290 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 51.0 5.24e-01 85.5% 95.0%
4946414 301.13.1.0 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.64 50.0 3.98e-01 83.9% 51.2%
3305941 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 52.0 4.33e-01 95.2% 60.8%
5021851 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.64 47.0 2.97e-01 80.6% 21.4%
3653274 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 52.0 4.76e-01 95.2% 84.7%
3299579 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 49.0 4.78e-01 88.7% 85.7%
4434012 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 51.0 4.75e-01 98.4% 89.4%
3984963 330.1.1.32 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › rve 0.62 49.0 4.77e-01 88.7% 100.0%
4237534 330.7.1.1 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › DUF905 0.61 50.0 5.15e-01 98.4% 96.7%
5049449 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 4.54e-01 74.2% 100.0%
3995776 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.60 49.0 4.51e-01 100.0% 83.3%
4052385 2003.1.10.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Rimk_N 0.59 44.0 3.77e-01 80.6% 65.7%
3299580 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 44.0 4.41e-01 85.5% 80.0%
3818729 605.3.1.4 alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain › SPC25 0.59 50.0 4.14e-01 100.0% 79.2%
5017964 220.1.1.322 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 0.58 42.0 3.80e-01 79.0% 75.3%
4932428 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 42.0 4.09e-01 79.0% 84.3%
3651210 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 44.0 4.44e-01 88.7% 90.0%
3185281 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.57 46.0 3.64e-01 90.3% 44.8%
None 0.57 42.0 2.90e-01 80.6% 60.5%
5001270 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 46.0 4.28e-01 95.2% 72.5%
3712060 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 44.0 3.23e-01 83.9% 89.7%
3510095 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.56 46.0 3.98e-01 96.8% 90.5%
4542899 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 46.0 3.54e-01 100.0% 92.7%
3867421 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 2.77e-01 80.6% 20.4%
5039580 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.99e-01 100.0% 94.8%
3443486 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 39.0 3.22e-01 79.0% 86.2%
3625308 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 45.0 3.77e-01 100.0% 72.0%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 44.0 4.22e-01 96.8% 88.0%
5040847 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 42.0 2.80e-01 87.1% 40.3%
3283925 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.54 44.0 3.05e-01 95.2% 48.1%
4930437 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 39.0 3.36e-01 79.0% 57.1%
3220940 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.53 41.0 3.30e-01 83.9% 67.2%
3721965 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.53 39.0 3.28e-01 80.6% 48.7%
4012616 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.53 39.0 3.29e-01 80.6% 49.6%
4663920 79.1.1.13 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_trimer_C 0.53 33.0 2.69e-01 77.4% 33.9%
4156379 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.53 39.0 2.98e-01 83.9% 50.9%
4159891 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.53 36.0 2.30e-01 77.4% 12.5%
5004624 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.36e-01 85.5% 52.6%
3600787 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.52 44.0 3.06e-01 100.0% 38.3%
3882636 214.1.1.11 a+b two layers › SH2 › SH2 › SH2 › PF27628 0.51 43.0 3.48e-01 100.0% 72.3%
5028346 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.50e-01 71.0% 95.0%
5013239 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.51 36.0 3.05e-01 77.4% 44.5%