←Back to structures

MN877442.1QHZ59867.1X__00137

Bact-Vir

MN877442.1__QHZ59867.1__X__00137

Identity

Accession:: MN877442 ↗
Kingdom:: phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myoalterovirus› Alteromonas_phage_vB_AmeM_PT11-V22

TaxID: 2704031

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-118

PDB

Domain cluster: rep: MH791404.1__QAX98911.1__assk_115__00104__D29-178

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23940.2 best	DUF7275	34.4	3.00e-08	42.7%	27.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hl6A02	1.20.58.700	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	32.0	3.25e-01	82.9%	47.8%
3chtA00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.57	51.0	3.81e-01	100.0%	64.8%
1iurA01	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.51	26.0	3.35e-01	81.2%	87.3%
1aluA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.50	43.0	3.89e-01	93.2%	77.7%
4muoA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.50	30.0	3.60e-01	96.6%	95.8%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3590445	316.2.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like	0.73	64.0	6.05e-01	94.9%	83.6%
3939120	180.1.1.1 ↗	alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2	0.60	41.0	3.70e-01	70.1%	85.6%
3226077	2484.1.1.50 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT	0.56	43.0	2.86e-01	80.3%	23.9%
3934092	5081.1.1.0 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like	0.53	48.0	4.17e-01	100.0%	93.9%
4250142	4030.1.1.2 ↗	alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F-actin_cap_A	0.53	27.0	3.51e-01	88.9%	100.0%
3355851	2484.1.1.110 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE	0.51	38.0	2.81e-01	77.8%	83.7%
5027357	2004.1.3.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR	0.50	42.0	3.70e-01	96.6%	96.9%

D2 high residues 130-267

PDB

Domain cluster: rep: MT028491.1__QIG65861.1__phiOC_p196__00195__D164-290

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23940.2 best	DUF7275	135.1	3.90e-39	92.8%	61.2%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gwiA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.59	52.0	3.74e-01	96.4%	90.5%
1hekA00	1.10.150.90	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17	0.58	40.0	4.27e-01	70.3%	97.4%
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.55	35.0	4.19e-01	93.5%	98.9%
3t8vA05	1.25.50.10	Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain	0.54	41.0	3.06e-01	78.3%	91.2%
1cy5A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.52	30.0	3.50e-01	81.2%	81.5%
2ce7B03	1.20.58.760	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41	0.52	44.0	4.17e-01	92.0%	83.3%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.52	30.0	3.41e-01	74.6%	76.3%
2elcA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.52	25.0	3.41e-01	70.3%	92.5%
1epuA03	1.25.40.60	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	36.0	3.83e-01	84.8%	80.6%
1x3kA01	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.50	36.0	3.61e-01	74.6%	89.8%
1xx7A00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.50	45.0	4.23e-01	100.0%	85.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3807513	633.4.1.0 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor	0.54	34.0	3.50e-01	81.9%	65.2%
3932981	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.54	43.0	3.41e-01	85.5%	89.5%
4488057	109.4.1.155 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med23	0.51	38.0	3.12e-01	76.8%	64.4%
3353679	3792.1.1.0 ↗	beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain	0.50	42.0	2.81e-01	91.3%	80.9%

D3 high residues 272-372

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fkaB00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.62	43.0	4.07e-01	100.0%	60.0%
2giaA00	2.30.31.40	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A ›	0.61	40.0	3.47e-01	82.2%	42.9%
1st8A01	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.57	44.0	3.14e-01	84.2%	50.2%
3qv0A00	3.10.280.10	Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein	0.57	40.0	3.27e-01	80.2%	40.8%
1q47A00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.56	43.0	2.78e-01	82.2%	24.2%
2jkgA00	3.30.450.30	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic	0.56	50.0	4.28e-01	100.0%	70.3%
3zxjA01	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.54	41.0	2.91e-01	81.2%	39.1%
4bg7A00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.53	33.0	3.39e-01	99.0%	63.3%
1omoA01	3.30.1780.10	Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1	0.53	39.0	3.45e-01	100.0%	52.3%
3jv1A00	3.10.280.10	Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein	0.53	37.0	3.03e-01	80.2%	40.1%
2ciuA00	3.10.450.320	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21	0.51	42.0	3.99e-01	97.0%	73.2%
2qm4A01	2.170.210.10	Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal	0.51	39.0	3.53e-01	88.1%	58.0%
2rqxA00	2.40.50.650	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.51	34.0	3.82e-01	90.1%	87.7%
3ossC00	2.30.30.830	Mainly Beta › Roll › SH3 type barrels. ›	0.50	31.0	3.83e-01	90.1%	98.5%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4028363	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.69	43.0	4.58e-01	98.0%	70.0%
4324380	5.1.5.213 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037	0.63	41.0	2.65e-01	98.0%	15.9%
4456473	5.1.5.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed	0.61	48.0	3.09e-01	83.2%	30.2%
4003669	5.1.4.37 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160	0.60	44.0	2.85e-01	85.1%	16.5%
3479716	3459.1.1.0 ↗	beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule	0.60	40.0	4.32e-01	97.0%	82.4%
3695635	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.59	38.0	3.98e-01	79.2%	72.2%
3707402	12.6.1.1 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C	0.59	29.0	3.28e-01	90.1%	60.0%
3584129	5.1.4.37 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160	0.58	44.0	2.75e-01	80.2%	28.3%
5081796	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.56	31.0	2.63e-01	84.2%	31.8%
3395786	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.56	44.0	3.04e-01	85.1%	39.4%
4030473	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.55	43.0	2.90e-01	84.2%	42.0%
3631256	5.1.4.169 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd	0.53	42.0	2.85e-01	84.2%	42.1%
3956703	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.53	41.0	4.02e-01	91.1%	75.5%
3241311	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.53	37.0	3.01e-01	92.1%	38.4%
5009289	3692.1.1.1 ↗	a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall	0.52	38.0	3.56e-01	100.0%	60.9%
3194130	5.1.5.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40	0.52	41.0	2.74e-01	84.2%	32.9%
4000029	5.1.4.139 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2	0.52	42.0	2.93e-01	87.1%	48.3%
3793405	10.1.1.17 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2	0.51	38.0	3.18e-01	81.2%	56.4%
3416070	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.51	41.0	2.79e-01	85.1%	41.4%
3563261	5.1.3.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed	0.51	39.0	2.84e-01	81.2%	33.9%
3287259	5.1.4.14 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N	0.51	37.0	2.65e-01	85.1%	23.6%
3284940	7579.1.1.0 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases	0.51	39.0	2.37e-01	82.2%	13.1%
3794738	10.1.1.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases	0.51	38.0	3.18e-01	82.2%	57.4%
3958336	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.50	40.0	2.92e-01	87.1%	59.0%
3405634	10.1.1.1 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1	0.50	37.0	3.16e-01	80.2%	53.9%
3799740	5.1.5.41 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2	0.50	39.0	2.49e-01	83.2%	22.9%