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MN882550.2__QHJ73576.1__X__00028

Bact-Vir

MN882550.2__QHJ73576.1__X__00028

Identity

Accession:
MN882550 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-83
PDB
D2 high residues 87-150
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n71A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.91 64.0 4.28e-01 73.4% 22.1%
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.88 65.0 4.26e-01 79.7% 20.4%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.86 62.0 6.34e-01 76.6% 78.7%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.86 67.0 5.49e-01 82.8% 74.5%
1t7sA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.85 64.0 5.00e-01 79.7% 47.3%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 61.0 6.05e-01 75.0% 82.1%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 64.0 4.60e-01 79.7% 30.4%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 63.0 6.01e-01 79.7% 69.9%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 64.0 6.01e-01 81.2% 68.4%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.83 61.0 4.93e-01 79.7% 42.4%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.83 65.0 5.24e-01 82.8% 46.9%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.82 62.0 6.37e-01 79.7% 95.1%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.82 63.0 5.38e-01 81.2% 96.0%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.81 60.0 6.09e-01 78.1% 88.7%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.81 60.0 5.81e-01 79.7% 75.3%
3hhcC00 1.20.1250.60 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda 0.81 57.0 4.25e-01 73.4% 35.8%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 59.0 6.59e-01 76.6% 100.0%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.81 60.0 5.57e-01 79.7% 80.2%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.80 62.0 5.63e-01 82.8% 90.6%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.79 60.0 5.55e-01 79.7% 64.6%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.79 59.0 5.44e-01 79.7% 63.0%
1fouA01 1.10.246.30 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.77 58.0 5.49e-01 79.7% 68.9%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 52.0 5.55e-01 71.9% 90.6%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 63.0 5.41e-01 93.8% 83.2%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 55.0 5.46e-01 81.2% 97.0%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 58.0 4.20e-01 89.1% 34.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 53.0 5.33e-01 79.7% 92.2%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 62.0 4.87e-01 100.0% 73.4%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 67.0 5.63e-01 100.0% 87.3%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 53.0 4.95e-01 79.7% 87.7%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 59.0 4.20e-01 93.8% 67.0%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.71 50.0 5.05e-01 79.7% 75.4%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 51.0 5.24e-01 81.2% 83.9%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 62.0 3.96e-01 100.0% 29.3%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.69 51.0 5.13e-01 79.7% 95.3%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 50.0 4.81e-01 81.2% 68.4%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 51.0 4.84e-01 98.4% 67.1%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 57.0 3.57e-01 100.0% 24.6%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.66 54.0 4.57e-01 90.6% 72.2%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.66 48.0 4.98e-01 81.2% 89.7%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 56.0 4.59e-01 100.0% 78.4%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.65 48.0 4.64e-01 81.2% 92.1%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 48.0 4.85e-01 82.8% 84.1%
4cj0A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 55.0 3.35e-01 96.9% 27.6%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.06e-01 84.4% 49.5%
4nufA02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.63 54.0 3.93e-01 95.3% 98.3%
1rq5A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.62 54.0 3.21e-01 98.4% 43.7%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.62 45.0 4.55e-01 79.7% 78.5%
1vs5O00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.61 52.0 4.74e-01 100.0% 84.1%
1lujB01 1.10.10.490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT 0.61 41.0 4.43e-01 93.8% 86.8%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.59 38.0 3.66e-01 71.9% 56.0%
2b99C00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.59 49.0 3.67e-01 90.6% 53.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4164825 4146.1.1.3 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › PKHD_C 0.92 63.0 7.39e-01 73.4% 100.0%
4385544 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.90 68.0 6.46e-01 79.7% 72.0%
3269731 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.90 77.0 6.17e-01 90.6% 88.7%
3227967 616.1.1.2 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS 0.90 76.0 7.91e-01 100.0% 95.0%
4363 605.8.1.1 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › SpoOE-like 0.90 68.0 7.17e-01 78.1% 87.7%
1002194 192.23.1.1 alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Rop-like 0.88 68.0 6.57e-01 81.2% 73.2%
4095641 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.88 67.0 5.73e-01 79.7% 56.8%
3387484 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.87 66.0 5.96e-01 79.7% 60.0%
5000174 601.16.1.0 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.85 77.0 6.60e-01 100.0% 89.0%
3735607 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.85 64.0 5.89e-01 79.7% 63.7%
3291574 192.29.1.248 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF27150 0.84 77.0 6.07e-01 100.0% 79.2%
3351064 540.1.1.1 few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B 0.84 65.0 6.48e-01 96.9% 80.0%
3701006 109.40.1.2 alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.84 70.0 5.96e-01 90.6% 67.0%
3877354 3291.1.1.14 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › LAP2alpha 0.84 63.0 4.35e-01 79.7% 26.2%
4213046 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.83 58.0 5.83e-01 79.7% 72.3%
3582379 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.83 66.0 6.46e-01 84.4% 95.7%
3610706 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.82 64.0 5.88e-01 81.2% 65.0%
3679373 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.82 63.0 6.33e-01 81.2% 81.5%
4971843 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 71.0 6.29e-01 93.8% 85.4%
4990095 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.80 70.0 6.31e-01 95.3% 83.5%
3215358 603.1.1.98 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.79 72.0 4.96e-01 98.4% 91.0%
3723174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 61.0 5.79e-01 82.8% 97.3%
3240469 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 68.0 6.15e-01 93.8% 87.1%
4996069 604.10.1.0 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac 0.79 67.0 5.97e-01 93.8% 83.3%
3471712 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.78 67.0 5.33e-01 93.8% 84.8%
3444036 601.1.1.91 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 0.78 70.0 5.61e-01 100.0% 95.2%
4278611 604.12.1.15 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Mito_morph_reg 0.77 66.0 5.22e-01 95.3% 77.7%
4971099 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.77 53.0 4.74e-01 78.1% 51.1%
3332286 3684.1.1.2 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.77 69.0 4.59e-01 98.4% 63.7%
4030740 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.76 67.0 5.53e-01 98.4% 91.3%
4134938 601.3.1.14 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PF27870 0.76 66.0 5.50e-01 100.0% 76.5%
3788539 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 57.0 3.45e-01 81.2% 13.8%
3730729 5050.1.1.12 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TRI12 0.75 64.0 4.01e-01 93.8% 66.5%
3260684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 53.0 5.69e-01 75.0% 100.0%
3806609 540.1.1.1 few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B 0.75 62.0 5.86e-01 98.4% 74.7%
3757999 219.1.1.9 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.75 56.0 3.58e-01 79.7% 95.9%
4042824 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.75 56.0 5.24e-01 81.2% 65.0%
3355246 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.75 56.0 5.23e-01 81.2% 65.0%
5004570 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.74 61.0 5.86e-01 93.8% 100.0%
4025271 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.73 60.0 5.21e-01 92.2% 81.0%
3595784 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.73 65.0 6.28e-01 100.0% 88.6%
4405653 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.71 59.0 3.55e-01 93.8% 38.1%
4083492 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.71 51.0 5.08e-01 81.2% 75.4%
4801882 192.1.1.1 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MCPsignal 0.71 53.0 5.36e-01 81.2% 87.5%
4028368 109.40.1.0 alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain 0.70 53.0 4.10e-01 85.9% 48.4%
3482907 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.68 60.0 4.83e-01 95.3% 81.7%
3693729 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.66 54.0 3.22e-01 93.8% 44.1%
4993526 101.11.1.13 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › EMC6_arch 0.65 57.0 5.11e-01 96.9% 88.6%
4096107 140.1.1.4 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.59 51.0 3.57e-01 100.0% 81.9%