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MN882553.2__QHJ73750.1__X__00020

Bact-Vir

MN882553.2__QHJ73750.1__X__00020

Identity

Accession:
MN882553 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-153
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.72 60.0 5.99e-01 99.1% 86.8%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 4.33e-01 88.0% 100.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589732 4166.1.1.2 beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.74 71.0 6.34e-01 100.0% 79.4%
393101 4166.1.1.3 beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Gp22 0.71 59.0 5.80e-01 99.1% 82.7%
4568169 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 35.0 3.91e-01 75.2% 86.7%
3857127 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 35.0 3.97e-01 86.3% 95.3%
5059105 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.44e-01 75.2% 69.0%
3873814 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 34.0 3.86e-01 85.5% 92.9%
4025288 5.1.3.160 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.51 38.0 2.64e-01 77.8% 89.0%
3755463 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.51 35.0 3.85e-01 86.3% 92.2%
3541221 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.50 34.0 3.81e-01 86.3% 95.3%
D2 high residues 276-363
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 53.0 3.30e-01 100.0% 13.9%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.61 43.0 3.95e-01 100.0% 55.7%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 54.0 5.22e-01 100.0% 98.0%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.60 51.0 4.44e-01 100.0% 59.6%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 44.0 4.46e-01 100.0% 78.7%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 4.64e-01 100.0% 95.5%
7qddB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 41.0 4.44e-01 84.1% 86.3%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.59 53.0 4.14e-01 100.0% 72.1%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 49.0 4.46e-01 98.9% 66.4%
1xxaC00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 46.0 4.94e-01 95.5% 100.0%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 41.0 4.40e-01 83.0% 84.4%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 41.0 4.35e-01 80.7% 84.0%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.59 45.0 4.20e-01 97.7% 66.4%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.58 40.0 4.35e-01 79.5% 84.0%
2dgtA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 40.0 4.30e-01 80.7% 84.9%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 4.06e-01 100.0% 67.3%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 44.0 4.69e-01 93.2% 98.6%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 41.0 3.88e-01 81.8% 63.0%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 4.12e-01 77.3% 85.7%
6e4nA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 39.0 4.29e-01 85.2% 91.5%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.44e-01 97.7% 78.3%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 48.0 3.92e-01 98.9% 96.6%
2ltlA00 3.30.1370.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Scaffold protein Nfu/NifU, N-terminal domain 0.55 49.0 4.41e-01 97.7% 84.9%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 38.0 4.10e-01 84.1% 84.0%
3cu7A12 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.54 46.0 3.99e-01 96.6% 59.4%
3pm9A03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.62e-01 79.5% 74.4%
7jsdA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 40.0 3.02e-01 84.1% 80.6%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.98e-01 100.0% 61.0%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.92e-01 79.5% 80.2%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 44.0 3.72e-01 95.5% 95.6%
1o4tA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.82e-01 100.0% 65.2%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.90e-01 100.0% 62.3%
1vi7A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.74e-01 78.4% 83.1%
3kt4A02 3.60.130.20 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain 0.52 40.0 2.79e-01 84.1% 96.5%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.72e-01 100.0% 55.9%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.52 45.0 3.65e-01 97.7% 83.4%
2f68X02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.75e-01 100.0% 59.3%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 3.60e-01 100.0% 49.2%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 2.98e-01 93.2% 37.1%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.50 40.0 4.10e-01 90.9% 92.9%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 36.0 3.86e-01 75.0% 92.0%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 42.0 2.95e-01 93.2% 61.9%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.94e-01 100.0% 91.7%
4k59A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.50 35.0 3.77e-01 90.9% 98.5%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 38.0 2.86e-01 83.0% 76.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184925 11.21.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.71 53.0 5.75e-01 100.0% 97.3%
3227673 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.66 50.0 3.90e-01 100.0% 35.6%
4969607 11.1.5.49 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 0.65 49.0 4.45e-01 97.7% 59.2%
5057396 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.63 42.0 4.54e-01 80.7% 80.0%
4362064 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.63 39.0 4.33e-01 76.1% 78.6%
4357399 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.63 41.0 4.58e-01 77.3% 84.3%
4658950 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.63 40.0 4.33e-01 78.4% 76.0%
4646361 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.63 40.0 4.39e-01 77.3% 80.0%
4314745 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.62 40.0 4.39e-01 78.4% 81.4%
4931433 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.62 41.0 4.52e-01 81.8% 84.3%
5044711 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 41.0 4.39e-01 81.8% 80.0%
3744728 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.61 33.0 4.16e-01 71.6% 95.8%
5005647 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 42.0 4.19e-01 96.6% 69.1%
3610345 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 40.0 4.12e-01 80.7% 72.9%
1016844 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.59 46.0 4.78e-01 94.3% 91.3%
4938397 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.59 38.0 4.06e-01 77.3% 77.3%
2806794 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.59 47.0 4.09e-01 97.7% 57.1%
1866047 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.58 32.0 3.88e-01 73.9% 83.9%
4943501 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.53e-01 100.0% 77.1%
4110651 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 42.0 3.42e-01 80.7% 41.9%
3290316 304.9.1.8 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DbpA 0.58 41.0 4.24e-01 79.5% 78.8%
5050652 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 42.0 3.66e-01 98.9% 49.3%
4989701 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.57 43.0 3.85e-01 79.5% 88.3%
5005058 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.56 43.0 3.39e-01 97.7% 37.4%
3562774 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.56 50.0 4.16e-01 100.0% 64.5%
3928208 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.56 39.0 4.21e-01 78.4% 85.3%
4934080 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 47.0 4.00e-01 94.3% 95.3%
4948011 304.28.1.38 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C 0.56 43.0 3.41e-01 83.0% 73.8%
3904587 11.1.1.1087 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_Hemicentin 0.55 48.0 3.71e-01 98.9% 81.9%
3187758 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 42.0 4.32e-01 83.0% 90.6%
5008353 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 45.0 4.04e-01 88.6% 78.3%
3572437 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.55 48.0 4.03e-01 100.0% 63.9%
5068228 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 49.0 4.63e-01 100.0% 90.5%
5055913 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 39.0 3.67e-01 79.5% 60.9%
3707436 306.2.2.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › Hypothetical protein SAV1430 › Nfu_N 0.54 49.0 4.41e-01 100.0% 95.8%
3595163 306.2.2.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › Hypothetical protein SAV1430 0.54 49.0 4.33e-01 100.0% 96.0%
3589896 11.1.5.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GBS104-like_Ig 0.54 46.0 3.75e-01 97.7% 57.0%
4987642 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.54 45.0 4.13e-01 94.3% 98.3%
153293 11.1.5.22 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Collagen_bind 0.53 46.0 3.90e-01 100.0% 57.1%
3884619 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 46.0 4.29e-01 100.0% 90.4%
1842935 11.1.5.57 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Zona_CL2 0.53 45.0 3.74e-01 97.7% 61.2%
4025604 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 47.0 4.38e-01 100.0% 85.5%
1396828 11.1.5.22 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Collagen_bind 0.52 45.0 3.87e-01 100.0% 60.5%
5049234 2.1.1.374 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110_C 0.52 39.0 3.16e-01 78.4% 55.8%
3887906 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 40.0 3.66e-01 81.8% 81.7%
3408761 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.52 33.0 3.59e-01 77.3% 77.3%
3398956 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.51 38.0 4.00e-01 79.5% 88.7%
4479378 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.51 37.0 3.93e-01 81.8% 85.0%
3639594 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 33.0 3.89e-01 75.0% 98.3%
3390970 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 38.0 3.26e-01 80.7% 75.3%
3231619 12.3.1.26 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_63N 0.51 41.0 3.02e-01 88.6% 87.8%
5063755 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 37.0 2.98e-01 92.0% 38.9%
4531300 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.50 36.0 3.74e-01 79.5% 78.8%
3603717 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 37.0 3.92e-01 86.4% 86.3%
5261 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.50 37.0 3.67e-01 78.4% 79.1%
D3 medium residues 170-229
PDB
Domain cluster: representative