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MN882553.2__QHJ73752.1__X__00022

Bact-Vir

MN882553.2__QHJ73752.1__X__00022

Identity

Accession:
MN882553 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.74 62.0 4.21e-01 93.5% 58.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.72 62.0 4.61e-01 100.0% 40.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.69 56.0 4.85e-01 88.7% 61.5%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.69 55.0 5.00e-01 88.7% 97.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.69 58.0 5.21e-01 100.0% 73.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.68 49.0 4.81e-01 90.3% 71.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.68 55.0 4.58e-01 88.7% 58.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 55.0 4.94e-01 100.0% 72.3%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 51.0 4.43e-01 88.7% 61.2%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 52.0 4.31e-01 90.3% 52.3%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.47e-01 100.0% 57.1%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.63 55.0 4.76e-01 100.0% 70.7%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.63 47.0 3.45e-01 80.6% 36.7%
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.66e-01 100.0% 65.9%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.63 52.0 4.46e-01 98.4% 62.7%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 43.0 2.98e-01 77.4% 19.3%
1djxA03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 55.0 4.32e-01 100.0% 50.4%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 4.36e-01 100.0% 57.9%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 4.27e-01 91.9% 56.1%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.61 52.0 4.57e-01 98.4% 71.6%
3wihA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.12e-01 100.0% 58.0%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.61 46.0 4.67e-01 91.9% 82.5%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 3.96e-01 100.0% 50.5%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.29e-01 100.0% 57.3%
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.60 50.0 3.71e-01 100.0% 87.2%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.65e-01 90.3% 67.8%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 54.0 4.40e-01 100.0% 62.2%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.40e-01 100.0% 65.9%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 4.38e-01 100.0% 65.3%
3w6gA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 45.0 3.56e-01 88.7% 47.6%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.03e-01 100.0% 57.8%
4kkdB04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 49.0 4.01e-01 100.0% 58.1%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.96e-01 100.0% 54.7%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 47.0 3.71e-01 100.0% 48.0%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.99e-01 100.0% 59.0%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 43.0 3.88e-01 100.0% 59.6%
1blwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.03e-01 100.0% 59.8%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 4.73e-01 98.4% 92.1%
1d0nA06 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 37.0 3.13e-01 74.2% 72.4%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 47.0 3.80e-01 100.0% 49.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.86e-01 100.0% 72.7%
2qjvA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.43e-01 95.2% 45.3%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.85e-01 100.0% 59.6%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 40.0 3.87e-01 88.7% 76.3%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 43.0 2.83e-01 100.0% 31.6%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 44.0 3.45e-01 100.0% 66.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 38.0 3.67e-01 87.1% 72.4%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 39.0 3.17e-01 83.9% 65.4%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.50 39.0 3.51e-01 88.7% 66.3%
4ay0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.62e-01 100.0% 65.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.83 69.0 6.46e-01 100.0% 74.7%
4979747 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.77 59.0 5.66e-01 82.3% 100.0%
5016503 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.71 62.0 5.18e-01 100.0% 63.6%
4019479 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.69 62.0 3.93e-01 100.0% 46.9%
4015408 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.69 61.0 3.77e-01 100.0% 40.3%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.69 57.0 5.35e-01 90.3% 98.7%
4028488 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.67 52.0 4.02e-01 100.0% 37.1%
3962625 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.67 57.0 5.07e-01 100.0% 65.6%
4281749 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.67 55.0 4.43e-01 90.3% 50.0%
4928621 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.66 50.0 3.93e-01 90.3% 37.1%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 42.0 3.30e-01 71.0% 30.8%
3235407 11.2.1.52 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.65 54.0 4.09e-01 90.3% 100.0%
4088887 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 53.0 4.46e-01 91.9% 54.5%
4995672 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 46.0 4.93e-01 87.1% 94.0%
3868467 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 49.0 3.99e-01 100.0% 43.2%
3461175 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 52.0 4.64e-01 100.0% 63.2%
None 0.62 55.0 4.82e-01 100.0% 84.2%
3966635 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 44.0 3.27e-01 75.8% 98.8%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 47.0 3.70e-01 90.3% 36.8%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 49.0 3.72e-01 88.7% 35.5%
3398694 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.61 51.0 4.43e-01 100.0% 93.3%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 47.0 4.77e-01 100.0% 88.3%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.60 53.0 4.31e-01 100.0% 92.5%
4152762 2492.1.1.20 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 0.60 49.0 3.64e-01 100.0% 54.7%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 43.0 4.58e-01 87.1% 100.0%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 40.0 4.38e-01 83.9% 97.8%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 41.0 4.43e-01 85.5% 100.0%
4472409 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.59 40.0 2.97e-01 71.0% 27.6%
3690210 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.59 51.0 3.24e-01 100.0% 37.3%
3197773 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.58 50.0 3.24e-01 100.0% 28.5%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 44.0 4.56e-01 88.7% 96.4%
4146398 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.58 39.0 2.94e-01 71.0% 27.1%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 42.0 4.54e-01 91.9% 98.0%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.58 40.0 4.24e-01 87.1% 92.0%
4945577 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 49.0 4.92e-01 100.0% 95.4%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 44.0 4.08e-01 87.1% 67.5%
3789334 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.57 40.0 3.54e-01 77.4% 99.0%
5047755 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.57 49.0 3.86e-01 100.0% 60.7%
4410522 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.57 38.0 2.86e-01 71.0% 28.5%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.57 39.0 4.29e-01 91.9% 100.0%
4152523 11.1.1.129 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.57 44.0 3.82e-01 100.0% 54.0%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.56 45.0 3.85e-01 90.3% 58.1%
5021393 206.1.3.17 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.56 42.0 2.79e-01 87.1% 18.5%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 45.0 3.85e-01 90.3% 58.7%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.56 45.0 4.37e-01 90.3% 87.1%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 42.0 4.08e-01 87.1% 73.3%
3957809 11.1.1.424 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2771 0.56 46.0 3.81e-01 100.0% 53.6%
4397568 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.56 43.0 3.87e-01 88.7% 60.0%
4011483 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.91e-01 100.0% 62.6%
3179826 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.55 46.0 3.81e-01 100.0% 60.0%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 44.0 3.71e-01 90.3% 56.5%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 43.0 3.76e-01 90.3% 60.4%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 43.0 4.36e-01 88.7% 94.9%
3393267 7579.1.1.2 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase 0.55 46.0 2.97e-01 100.0% 55.0%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 42.0 4.31e-01 87.1% 94.8%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 42.0 4.24e-01 88.7% 95.2%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 41.0 4.16e-01 88.7% 96.7%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.53 35.0 3.85e-01 80.6% 97.8%
3279119 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.53 48.0 3.68e-01 100.0% 51.9%
3274736 2.2.1.14 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › BP74_N 0.52 41.0 3.42e-01 90.3% 99.1%
3472406 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.52 43.0 2.84e-01 98.4% 42.7%
3170957 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.51 42.0 3.59e-01 100.0% 90.4%
3285626 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.50 35.0 2.64e-01 72.6% 59.4%