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MN882553.2__QHJ73811.1__X__00072
Bact-VirMN882553.2__QHJ73811.1__X__00072
Identity
- Accession:
- MN882553 ↗
- Kingdom:
- phage
Quality
69.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-77
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 58.0 | 4.69e-01 | 72.0% | 40.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.83 | 62.0 | 6.22e-01 | 78.7% | 80.5% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 60.0 | 5.93e-01 | 74.7% | 71.8% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.81 | 61.0 | 4.91e-01 | 80.0% | 52.1% |
| 4iggB02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.79 | 55.0 | 4.67e-01 | 78.7% | 45.5% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 54.0 | 5.08e-01 | 100.0% | 59.3% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.78 | 61.0 | 5.06e-01 | 100.0% | 48.5% |
| 3etvA01 | 1.10.287.3290 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 67.0 | 6.44e-01 | 100.0% | 82.1% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.78 | 69.0 | 6.67e-01 | 100.0% | 93.0% |
| 1xdpA01 | 1.20.58.310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain | 0.76 | 57.0 | 5.04e-01 | 78.7% | 57.1% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 54.0 | 5.01e-01 | 78.7% | 59.6% |
| 3vkgA02 | 1.20.140.100 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain | 0.75 | 68.0 | 5.43e-01 | 100.0% | 74.8% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 53.0 | 4.78e-01 | 73.3% | 58.6% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.73 | 54.0 | 4.63e-01 | 81.3% | 49.6% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.73 | 60.0 | 4.14e-01 | 89.3% | 66.5% |
| 8hk0B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.73 | 53.0 | 4.33e-01 | 78.7% | 42.0% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.72 | 51.0 | 5.50e-01 | 92.0% | 90.2% |
| 4akvA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 61.0 | 4.51e-01 | 93.3% | 75.3% |
| 4xvxA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 51.0 | 4.13e-01 | 77.3% | 42.2% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 48.0 | 4.36e-01 | 89.3% | 53.5% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 52.0 | 4.45e-01 | 82.7% | 50.8% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.65 | 50.0 | 5.02e-01 | 88.0% | 80.8% |
| 2zxeA02 | 1.20.1110.10 | Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain | 0.64 | 58.0 | 3.60e-01 | 100.0% | 25.5% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.63 | 42.0 | 4.09e-01 | 100.0% | 62.2% |
| 5a0uA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.62 | 55.0 | 3.14e-01 | 100.0% | 63.5% |
| 5u56A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 54.0 | 4.72e-01 | 100.0% | 85.7% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.60 | 53.0 | 4.63e-01 | 98.7% | 80.0% |
| 1ya0A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 55.0 | 3.91e-01 | 100.0% | 58.3% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.59 | 43.0 | 3.71e-01 | 78.7% | 69.8% |
| 5ymrC00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.58 | 50.0 | 2.89e-01 | 100.0% | 64.6% |
| 3dpjF00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 47.0 | 3.57e-01 | 92.0% | 79.3% |
| 2hqcA01 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.56 | 41.0 | 3.09e-01 | 89.3% | 29.2% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.53 | 49.0 | 3.66e-01 | 100.0% | 59.6% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 45.0 | 4.08e-01 | 97.3% | 80.2% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.52 | 43.0 | 3.70e-01 | 93.3% | 88.0% |
| 4iw9A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 43.0 | 3.85e-01 | 98.7% | 78.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3620978 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.92 | 72.0 | 4.52e-01 | 81.3% | 19.7% |
| 4473674 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.86 | 69.0 | 5.95e-01 | 84.0% | 57.3% |
| 3488077 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.85 | 62.0 | 5.66e-01 | 77.3% | 60.0% |
| 3819233 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.83 | 65.0 | 5.49e-01 | 84.0% | 53.0% |
| 3581262 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.82 | 59.0 | 5.57e-01 | 78.7% | 63.3% |
| 4176312 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.81 | 56.0 | 5.01e-01 | 77.3% | 53.0% |
| 3318544 | 150.1.1.78 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rx_N | 0.80 | 57.0 | 5.56e-01 | 73.3% | 71.2% |
| 3171345 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.79 | 60.0 | 4.44e-01 | 86.7% | 33.3% |
| 4010684 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.78 | 61.0 | 3.71e-01 | 81.3% | 77.7% |
| 3924651 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.77 | 53.0 | 4.87e-01 | 70.7% | 64.2% |
| 4463061 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.77 | 54.0 | 4.64e-01 | 78.7% | 47.8% |
| 4026675 | 603.1.1.172 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF1617 | 0.76 | 57.0 | 4.94e-01 | 80.0% | 52.2% |
| 3214189 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.75 | 56.0 | 5.02e-01 | 80.0% | 61.0% |
| 4576993 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.75 | 56.0 | 5.27e-01 | 98.7% | 66.7% |
| 3211184 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 53.0 | 5.02e-01 | 80.0% | 63.3% |
| 4186985 | 605.1.1.191 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › NtrY_N | 0.72 | 54.0 | 4.59e-01 | 82.7% | 48.8% |
| 3994000 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 55.0 | 4.94e-01 | 82.7% | 61.0% |
| 3592900 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 64.0 | 4.35e-01 | 97.3% | 38.0% |
| 4927816 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.69 | 57.0 | 4.10e-01 | 100.0% | 32.4% |
| 3569150 | 109.4.1.911 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C | 0.69 | 52.0 | 3.18e-01 | 82.7% | 23.6% |
| 5057603 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.68 | 51.0 | 4.09e-01 | 88.0% | 40.0% |
| 3513582 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.68 | 52.0 | 4.61e-01 | 82.7% | 60.0% |
| 3766956 | 622.4.1.22 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › FAM186A-B_N | 0.68 | 58.0 | 4.99e-01 | 96.0% | 61.7% |
| 3483993 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.67 | 50.0 | 4.57e-01 | 80.0% | 61.0% |
| 4317199 | 603.5.1.1 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN | 0.67 | 48.0 | 4.16e-01 | 78.7% | 48.8% |
| 3250598 | 633.6.1.2 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX | 0.66 | 51.0 | 3.92e-01 | 84.0% | 37.3% |
| 4336172 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 57.0 | 3.71e-01 | 96.0% | 34.8% |
| 4275199 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.65 | 55.0 | 4.61e-01 | 98.7% | 55.2% |
| 3901696 | 192.8.1.240 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › HR1 | 0.64 | 56.0 | 5.35e-01 | 97.3% | 82.4% |
| 2526302 | 2500.1.1.3 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like | 0.64 | 56.0 | 3.25e-01 | 100.0% | 76.7% |
| 3746549 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.63 | 48.0 | 4.04e-01 | 82.7% | 48.8% |
| 3265926 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 56.0 | 3.83e-01 | 100.0% | 57.0% |
| 3989579 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.62 | 47.0 | 2.89e-01 | 84.0% | 22.0% |
| 3245538 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 45.0 | 4.14e-01 | 80.0% | 60.0% |
| 1069165 | 3718.1.1.1 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT | 0.61 | 46.0 | 4.32e-01 | 100.0% | 66.0% |
| 4100012 | 327.13.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAH | 0.60 | 53.0 | 4.59e-01 | 98.7% | 80.5% |
| 5052035 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.60 | 52.0 | 3.59e-01 | 96.0% | 48.8% |
| 3482635 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 53.0 | 3.57e-01 | 100.0% | 26.9% |
| 3919099 | 621.1.1.8 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 | 0.59 | 51.0 | 4.27e-01 | 98.7% | 63.7% |
| 3980912 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.57 | 41.0 | 3.59e-01 | 98.7% | 49.6% |
| 3656055 | 219.1.1.48 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C65 | 0.55 | 50.0 | 3.34e-01 | 100.0% | 27.1% |
| 3866897 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.54 | 46.0 | 4.27e-01 | 92.0% | 78.9% |