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MN904502.1__QHZ59421.1__FK483_0078__00078

Bact-Vir

MN904502.1__QHZ59421.1__FK483_0078__00078

Identity

Accession:
MN904502 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Homburgvirus› Listeria_phage_LP-018

TaxID: 2590048

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-63
PDB
Domain cluster: rep: NC_009814.1__YP_001468831.1__LiPP35_gp47__00047__DFULL
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.69 58.0 3.63e-01 95.2% 45.7%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.68 58.0 3.68e-01 95.2% 41.7%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 57.0 3.52e-01 98.4% 95.1%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 53.0 3.41e-01 88.9% 23.0%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 53.0 3.39e-01 88.9% 22.9%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 57.0 3.67e-01 100.0% 47.7%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 52.0 4.96e-01 95.2% 73.3%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 52.0 4.07e-01 87.3% 43.9%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 56.0 3.52e-01 98.4% 49.6%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 54.0 3.47e-01 96.8% 39.6%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.64 56.0 3.59e-01 100.0% 56.0%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.61e-01 100.0% 91.8%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 56.0 3.56e-01 100.0% 72.3%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.45e-01 96.8% 33.8%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.62 55.0 3.20e-01 100.0% 88.3%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 52.0 3.46e-01 100.0% 64.7%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 3.03e-01 87.3% 17.7%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 48.0 3.85e-01 85.7% 80.5%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 52.0 3.25e-01 98.4% 73.4%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 50.0 3.17e-01 100.0% 75.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 42.0 4.23e-01 76.2% 93.8%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 45.0 3.81e-01 84.1% 94.5%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.21e-01 100.0% 30.8%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.03e-01 95.2% 99.1%
2gprA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.57 39.0 3.02e-01 71.4% 53.2%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 47.0 3.14e-01 98.4% 35.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 42.0 3.52e-01 79.4% 48.6%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 44.0 3.70e-01 90.5% 82.4%
2hsiB02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.55 41.0 3.29e-01 84.1% 80.8%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.98e-01 98.4% 62.3%
3wxeA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 44.0 2.87e-01 88.9% 89.0%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 3.62e-01 98.4% 52.7%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.83e-01 93.7% 67.3%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 43.0 3.11e-01 90.5% 41.5%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 42.0 4.06e-01 85.7% 86.3%
3hi7B02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.53e-01 93.7% 72.7%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.53 40.0 2.97e-01 84.1% 73.4%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 42.0 3.43e-01 93.7% 71.5%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 43.0 3.70e-01 95.2% 95.4%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 44.0 3.52e-01 96.8% 87.4%
4w82A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 38.0 2.98e-01 84.1% 81.9%
4n03A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 42.0 3.15e-01 98.4% 96.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259900 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.74 61.0 3.54e-01 90.5% 25.7%
3817379 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.73 57.0 3.30e-01 85.7% 27.4%
3740917 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 54.0 3.38e-01 85.7% 28.1%
3697771 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 54.0 3.29e-01 85.7% 33.6%
3926511 5.1.5.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CNH 0.69 55.0 3.53e-01 87.3% 24.1%
3782385 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.68 60.0 3.58e-01 98.4% 50.9%
3463667 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.68 59.0 3.74e-01 96.8% 40.9%
4027435 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 53.0 3.50e-01 85.7% 34.7%
3996624 5.1.5.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.68 54.0 3.31e-01 87.3% 27.7%
3459220 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.67 56.0 3.58e-01 95.2% 43.1%
3608449 5.1.4.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st 0.67 58.0 3.49e-01 98.4% 27.5%
2814399 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.66 52.0 3.52e-01 87.3% 27.8%
3496522 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 58.0 3.47e-01 100.0% 91.7%
4002773 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.65 57.0 3.50e-01 100.0% 68.8%
3391005 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 56.0 3.55e-01 98.4% 42.6%
3338677 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.65 53.0 3.36e-01 90.5% 33.5%
3490544 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.64 54.0 3.32e-01 93.7% 30.8%
3629277 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.64 54.0 3.28e-01 95.2% 24.5%
3576335 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.45e-01 96.8% 50.9%
4018575 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 50.0 3.11e-01 87.3% 20.0%
3826919 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 55.0 3.39e-01 100.0% 29.3%
3815390 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.64 48.0 3.71e-01 82.5% 95.9%
3261831 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.63 54.0 4.36e-01 98.4% 56.2%
3934835 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 55.0 3.52e-01 100.0% 87.5%
3906313 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 54.0 3.38e-01 98.4% 69.3%
3722546 5.1.4.379 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_2 0.63 55.0 3.45e-01 100.0% 66.8%
3702598 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.63 53.0 3.20e-01 95.2% 30.2%
3605586 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.63 50.0 3.08e-01 88.9% 17.7%
3814457 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 52.0 3.34e-01 93.7% 37.5%
3769451 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 52.0 3.35e-01 95.2% 48.9%
4004052 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 52.0 3.42e-01 95.2% 39.3%
3256808 5.1.4.474 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, Beta-prop_THOC3 0.62 54.0 3.33e-01 100.0% 53.1%
4030008 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 55.0 3.51e-01 100.0% 45.4%
3459953 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.62 53.0 3.72e-01 96.8% 53.7%
3226941 5.1.3.44 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hyd_WA 0.61 51.0 3.30e-01 95.2% 35.6%
3174396 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 53.0 3.32e-01 100.0% 82.6%
4028583 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 54.0 3.46e-01 100.0% 58.7%
3713627 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.61 53.0 3.45e-01 100.0% 76.3%
3709245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 44.0 4.06e-01 92.1% 58.8%
4016640 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.34e-01 100.0% 56.6%
4501642 3933.1.1.1 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.60 45.0 4.34e-01 79.4% 95.7%
3230195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 50.0 3.21e-01 98.4% 74.5%
3326297 2004.1.1.299 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.60 49.0 3.38e-01 92.1% 84.4%
4973393 3933.1.1.1 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.59 44.0 4.16e-01 79.4% 96.0%
3176337 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.18e-01 98.4% 78.9%
4406661 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.58 47.0 3.63e-01 90.5% 74.7%
3961067 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.57 44.0 3.65e-01 90.5% 76.2%
3968312 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 43.0 3.73e-01 88.9% 81.5%
1088864 9.1.1.15 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF2147 0.56 46.0 3.65e-01 98.4% 52.4%
3960237 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.55 43.0 3.67e-01 90.5% 86.1%
3942731 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.55 39.0 3.52e-01 76.2% 100.0%
4547005 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.54 44.0 3.46e-01 95.2% 66.7%
4079885 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.54 40.0 3.54e-01 81.0% 77.9%
4506377 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.54 42.0 3.30e-01 90.5% 66.5%
4487967 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.53 42.0 3.72e-01 90.5% 88.0%
4031542 66.1.1.2 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.53 42.0 3.71e-01 90.5% 88.9%
2807787 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.53 43.0 3.46e-01 96.8% 70.4%
3263717 213.1.1.35 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG 0.52 34.0 3.38e-01 96.8% 62.9%
4035796 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.52 43.0 3.68e-01 100.0% 80.0%