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MN904502.1__QHZ59422.1__FK483_0079__00079

Bact-Vir

MN904502.1__QHZ59422.1__FK483_0079__00079

Identity

Accession:
MN904502 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Homburgvirus› Listeria_phage_LP-018

TaxID: 2590048

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-81
PDB
Domain cluster: rep: IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351939__D9-76
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 57.0 5.25e-01 100.0% 67.7%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 50.0 3.64e-01 100.0% 42.9%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.81e-01 78.4% 84.9%
3pg6B00 3.30.390.130 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 45.0 3.80e-01 93.2% 76.1%
1alo006 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.54 43.0 3.67e-01 89.2% 56.3%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 38.0 3.22e-01 81.1% 88.7%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.52 46.0 3.48e-01 100.0% 54.7%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 43.0 2.92e-01 93.2% 42.6%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.51 45.0 3.62e-01 100.0% 65.1%
3oreA01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 36.0 3.82e-01 77.0% 100.0%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.12e-01 100.0% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3424980 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.66 45.0 3.79e-01 100.0% 40.8%
5053278 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.66 56.0 3.60e-01 97.3% 67.8%
3405253 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.64 55.0 5.53e-01 95.9% 96.0%
4009918 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.64 54.0 3.66e-01 95.9% 83.9%
3224634 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.60 44.0 2.86e-01 79.7% 79.7%
3236742 2484.1.1.233 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.59 48.0 3.19e-01 89.2% 81.0%
4356087 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.59 52.0 3.93e-01 100.0% 91.9%
3806393 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 37.0 3.93e-01 97.3% 72.3%
4261739 3068.2.1.1 ↗ a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C 0.59 51.0 4.55e-01 100.0% 81.8%
3681911 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.59 39.0 3.86e-01 100.0% 63.7%
3505737 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.58 51.0 4.73e-01 100.0% 97.9%
4864681 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.57 37.0 3.59e-01 77.0% 57.0%
3697543 101.1.17.21 ↗ alpha arrays › HTH › HTH › FF domain › Tri-helical 0.55 40.0 3.83e-01 100.0% 64.4%
4927303 525.1.1.1 ↗ a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.55 41.0 3.52e-01 79.7% 80.0%
3958154 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.55 48.0 4.27e-01 100.0% 68.2%
3232668 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 39.0 2.60e-01 74.3% 60.9%
3241453 2484.1.1.233 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.53 41.0 2.87e-01 90.5% 82.5%
3724001 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 39.0 3.40e-01 100.0% 47.7%
3354291 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.52 37.0 2.56e-01 77.0% 36.6%
3790940 306.3.1.2 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 0.52 44.0 3.85e-01 97.3% 75.6%
3234134 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 37.0 2.45e-01 75.7% 63.7%
4449126 1166.1.1.1 ↗ alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.51 43.0 3.19e-01 95.9% 71.2%
3588002 298.1.1.20 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.51 35.0 2.67e-01 71.6% 50.3%
4505080 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.50 34.0 2.96e-01 70.3% 44.8%
3830169 109.4.1.1383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.50 44.0 2.53e-01 98.6% 41.3%
3227807 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 43.0 2.93e-01 98.6% 51.9%