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MN908685.1__QIG57778.1__SEA_PAULODIABOLI_43__00043

Bact-Vir

MN908685.1__QIG57778.1__SEA_PAULODIABOLI_43__00043

Identity

Accession:
MN908685 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_PauloDiaboli

TaxID: 2704039

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-102
PDB
Domain cluster: rep: Salt_Pond_R2_restored_H2O_MG_scaffold_1_prodigal-single.1__X__X__00147__D3-95
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01230.30 best HIT 31.4 3.50e-07 86.2% 81.6%
D2 medium residues 123-160
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.96 89.0 7.40e-01 100.0% 61.3%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.94 83.0 7.66e-01 100.0% 77.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.94 85.0 7.26e-01 100.0% 65.5%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.93 85.0 6.75e-01 100.0% 53.5%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.93 83.0 6.67e-01 100.0% 54.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.91 81.0 6.66e-01 100.0% 98.5%
3u4qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.91 70.0 4.22e-01 89.5% 14.0%
3wi3B00 1.20.58.2130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.90 81.0 4.94e-01 100.0% 19.3%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.90 76.0 4.84e-01 100.0% 21.1%
1o9gA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.89 75.0 7.30e-01 100.0% 86.0%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.87 74.0 5.20e-01 100.0% 31.9%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.86 75.0 6.42e-01 100.0% 62.3%
3e0sA00 1.40.20.10 Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain 0.86 76.0 4.43e-01 100.0% 12.8%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.85 59.0 5.09e-01 100.0% 48.3%
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.84 72.0 4.19e-01 97.4% 12.5%
4l9pA00 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.82 67.0 3.91e-01 97.4% 11.0%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.81 68.0 6.05e-01 100.0% 67.2%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 63.0 6.22e-01 100.0% 92.9%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.72 58.0 5.49e-01 92.1% 74.5%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.72 56.0 5.46e-01 100.0% 83.0%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.69 59.0 4.15e-01 100.0% 58.7%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.68 53.0 3.67e-01 89.5% 25.4%
2r7aB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.68 50.0 3.55e-01 78.9% 24.6%
2q8pA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.67 54.0 3.65e-01 97.4% 22.1%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 54.0 3.80e-01 100.0% 32.6%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.62 52.0 4.81e-01 100.0% 73.5%
2y2wC02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 52.0 3.03e-01 100.0% 13.0%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 49.0 4.41e-01 100.0% 73.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504099 3846.1.1.0 ↗ alpha bundles › IcmR › IcmR › IcmR 0.97 90.0 8.44e-01 100.0% 84.4%
3330916 3846.1.1.0 ↗ alpha bundles › IcmR › IcmR › IcmR 0.96 90.0 7.76e-01 100.0% 94.5%
4031046 192.7.1.1 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.96 88.0 7.39e-01 100.0% 63.3%
3484950 605.8.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like 0.95 87.0 8.18e-01 100.0% 84.4%
1007238 3846.1.1.1 ↗ alpha bundles › IcmR › IcmR › IcmR › IcmR 0.94 85.0 7.25e-01 100.0% 64.4%
4497069 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.94 85.0 6.02e-01 100.0% 36.2%
3987802 192.7.1.1 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.94 85.0 7.21e-01 100.0% 63.3%
5020290 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.93 84.0 7.33e-01 100.0% 69.1%
1176726 4325.1.1.2 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C 0.93 84.0 6.74e-01 100.0% 53.5%
3459313 616.1.1.1 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.92 82.0 6.09e-01 100.0% 42.2%
4794921 109.60.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › RPAP3 C-terminal domain-like › RPAP3 C-terminal domain-like › RPAP3_C 0.91 78.0 7.17e-01 97.4% 74.0%
4957171 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.90 79.0 6.60e-01 100.0% 58.5%
3413450 109.4.1.704 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › P4Ha_N 0.90 78.0 4.85e-01 97.4% 19.5%
3274908 616.1.1.1 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.89 77.0 5.05e-01 100.0% 24.7%
2388286 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.87 75.0 6.13e-01 100.0% 52.8%
4030521 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.87 75.0 6.01e-01 100.0% 50.7%
3582042 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.82 69.0 5.44e-01 97.4% 46.3%
3354262 109.7.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › TPR_1 0.80 64.0 5.20e-01 97.4% 46.3%
3593362 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.77 63.0 5.06e-01 100.0% 44.7%
4202710 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.72 58.0 5.63e-01 100.0% 86.7%
3630756 5043.1.1.2 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 0.71 57.0 4.76e-01 92.1% 71.4%
4029452 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.68 54.0 5.33e-01 92.1% 87.5%
3168913 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.66 59.0 3.76e-01 100.0% 20.5%