←Back to structures

MN908685.1__QIG57801.1__SEA_PAULODIABOLI_66__00066

Bact-Vir

MN908685.1__QIG57801.1__SEA_PAULODIABOLI_66__00066

Identity

Accession:
MN908685 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_PauloDiaboli

TaxID: 2704039

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-54
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.63 36.0 3.33e-01 90.7% 41.7%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 41.0 3.95e-01 83.3% 62.9%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 33.0 3.45e-01 85.2% 60.0%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 34.0 3.04e-01 88.9% 40.0%
5flxf00 6.20.50.150 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 33.0 3.04e-01 88.9% 39.7%
2ghrA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 42.0 2.76e-01 88.9% 46.0%
6vfrA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 42.0 3.45e-01 92.6% 71.4%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 2.73e-01 72.2% 77.5%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 38.0 4.02e-01 90.7% 95.6%
2zuvA03 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 41.0 2.78e-01 100.0% 57.9%
5i99A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.35e-01 87.0% 94.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929724 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 46.0 4.92e-01 92.6% 80.0%
4952442 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 39.0 4.03e-01 85.2% 58.0%
4249162 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.63 45.0 3.18e-01 75.9% 61.3%
3392142 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.62 42.0 4.24e-01 92.6% 70.9%
3501282 3246.1.1.0 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins 0.61 41.0 3.81e-01 90.7% 54.3%
4460368 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 37.0 3.99e-01 87.0% 73.3%
4399416 2007.1.1.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HTS 0.59 40.0 2.52e-01 70.4% 39.0%
4961814 375.1.1.341 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7568 0.59 40.0 4.53e-01 88.9% 95.0%
4279904 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 45.0 2.89e-01 85.2% 69.5%
3979951 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.57 35.0 2.77e-01 94.4% 28.3%
4036003 2007.1.1.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HTS 0.56 43.0 2.74e-01 83.3% 41.5%
4388850 2007.1.1.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HTS 0.56 45.0 2.83e-01 88.9% 38.0%
5043972 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.55 45.0 3.83e-01 100.0% 86.9%
3708854 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 35.0 3.65e-01 85.2% 74.0%
1498413 3894.1.1.0 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.53 40.0 3.01e-01 81.5% 86.7%
4369475 2007.1.1.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HTS 0.53 42.0 2.63e-01 88.9% 36.5%
3710545 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.52 38.0 3.43e-01 77.8% 85.3%
3525415 398.1.1.0 ↗ few secondary structure elements › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers 0.52 33.0 3.54e-01 87.0% 73.3%
3634916 9.4.1.4 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 0.52 41.0 3.00e-01 88.9% 63.3%
3358110 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.96e-01 92.6% 93.3%
5049448 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.67e-01 85.2% 95.0%