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MN908685.1__QIG57901.1__SEA_PAULODIABOLI_215__00171

Bact-Vir

MN908685.1__QIG57901.1__SEA_PAULODIABOLI_215__00171

Identity

Accession:
MN908685 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_PauloDiaboli

TaxID: 2704039

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-40_54-93
PDB
Domain cluster: rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 35.0 3.99e-01 100.0% 62.0%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 30.0 4.11e-01 94.2% 76.5%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.69 33.0 4.22e-01 98.6% 81.6%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 34.0 4.35e-01 100.0% 87.2%
3fbyA01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.65 36.0 4.29e-01 85.5% 78.7%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 31.0 3.56e-01 100.0% 58.0%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 37.0 3.18e-01 100.0% 37.7%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 42.0 3.63e-01 72.5% 92.0%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 47.0 3.18e-01 91.3% 98.7%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 40.0 3.01e-01 81.2% 43.1%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 37.0 3.25e-01 75.4% 47.7%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.53 42.0 2.60e-01 88.4% 78.7%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 38.0 2.69e-01 81.2% 36.1%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 36.0 3.09e-01 73.9% 47.4%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.70e-01 88.4% 95.6%
1oe8A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 44.0 4.20e-01 100.0% 91.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4043931 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.81 37.0 3.99e-01 100.0% 50.0%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.77 36.0 4.04e-01 100.0% 54.5%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.75 34.0 3.39e-01 100.0% 40.0%
4945977 1143.1.1.0 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit 0.71 40.0 3.77e-01 92.8% 47.5%
5068179 1143.1.1.1 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.65 41.0 3.74e-01 100.0% 48.9%
4330222 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.64 46.0 3.89e-01 100.0% 44.2%
4208229 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.64 32.0 3.66e-01 100.0% 64.0%
4937917 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 4.59e-01 89.9% 98.0%
3914983 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.58 42.0 3.08e-01 75.4% 95.1%
3537276 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 36.0 3.30e-01 100.0% 46.3%
3602039 7525.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like 0.55 45.0 3.21e-01 92.8% 97.2%
3598187 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.55 38.0 3.06e-01 72.5% 55.7%
5028692 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 37.0 3.81e-01 73.9% 90.8%
3941962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 37.0 3.45e-01 75.4% 71.1%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 37.0 3.77e-01 73.9% 90.8%
5043091 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 36.0 3.71e-01 73.9% 86.8%
3970459 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 37.0 3.82e-01 75.4% 93.8%
5067372 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 37.0 3.97e-01 91.3% 90.0%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.51 38.0 3.66e-01 81.2% 88.7%
4962194 1143.1.1.1 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.51 34.0 3.48e-01 71.0% 98.6%
5007497 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.51 38.0 2.59e-01 82.6% 80.4%