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MN908685.1__QIG58020.1__SEA_PAULODIABOLI_336__00292

Bact-Vir

MN908685.1__QIG58020.1__SEA_PAULODIABOLI_336__00292

Identity

Accession:
MN908685 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 54.0 4.80e-01 100.0% 60.6%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 51.0 3.80e-01 100.0% 32.7%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.65 51.0 4.60e-01 100.0% 62.4%
7c51A01 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.64 55.0 4.62e-01 100.0% 63.1%
6wl5A01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.64 53.0 4.05e-01 100.0% 38.9%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.64 55.0 4.29e-01 100.0% 94.3%
6fdfA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 3.49e-01 100.0% 27.2%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 47.0 4.40e-01 100.0% 64.6%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 48.0 3.44e-01 100.0% 26.5%
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 50.0 3.51e-01 100.0% 26.5%
7qu8A01 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.63 49.0 3.48e-01 88.7% 36.1%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 46.0 4.04e-01 100.0% 52.0%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.61 50.0 4.46e-01 100.0% 62.8%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 3.91e-01 100.0% 47.3%
1nbwA02 3.90.470.30 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain 0.60 54.0 4.10e-01 100.0% 93.7%
4yxqB01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 51.0 3.50e-01 100.0% 59.2%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 44.0 3.92e-01 100.0% 52.6%
5c4iE01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 46.0 3.28e-01 100.0% 25.7%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.60 50.0 4.31e-01 100.0% 58.6%
5ce8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.60 51.0 4.20e-01 100.0% 94.3%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 42.0 3.78e-01 100.0% 52.8%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 3.89e-01 100.0% 52.5%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 42.0 3.52e-01 91.9% 42.1%
1wxaA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 43.0 3.65e-01 82.3% 84.5%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 3.86e-01 100.0% 49.5%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.58 50.0 4.04e-01 100.0% 49.2%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.80e-01 100.0% 46.2%
1el6A02 2.20.20.20 Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain 0.58 37.0 4.12e-01 100.0% 87.2%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.58 41.0 3.87e-01 100.0% 60.5%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 49.0 4.31e-01 100.0% 68.7%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 46.0 3.02e-01 91.9% 95.3%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 3.78e-01 100.0% 52.5%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.08e-01 100.0% 56.6%
3aoxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 41.0 3.55e-01 100.0% 49.0%
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 43.0 3.15e-01 100.0% 29.9%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.96e-01 100.0% 58.3%
1u8xX02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.55 39.0 2.58e-01 75.8% 79.3%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 2.65e-01 82.3% 94.3%
2wz1B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 44.0 3.21e-01 95.2% 51.5%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.14e-01 100.0% 30.3%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.24e-01 100.0% 28.4%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 44.0 3.69e-01 100.0% 81.2%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.73e-01 91.9% 88.8%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.82e-01 100.0% 63.9%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.68e-01 100.0% 54.9%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.55e-01 100.0% 54.0%
2bmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.35e-01 100.0% 89.1%
2jdjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.49e-01 100.0% 52.9%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.54e-01 100.0% 54.4%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.76e-01 100.0% 66.4%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.64e-01 100.0% 68.5%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.32e-01 100.0% 56.1%
1chmA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.50 44.0 2.98e-01 100.0% 30.9%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.34e-01 100.0% 50.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3648422 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.70 47.0 3.73e-01 100.0% 33.8%
4233442 304.4.1.54 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.68 54.0 4.39e-01 100.0% 45.0%
3730776 304.28.1.16 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA 0.66 55.0 4.53e-01 100.0% 50.4%
3649941 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.66 59.0 4.55e-01 100.0% 96.3%
3762934 882.1.1.1 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal_L5 0.64 48.0 3.57e-01 100.0% 31.2%
3725393 304.4.1.49 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AtuA 0.64 53.0 4.69e-01 100.0% 61.1%
5020745 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.64 56.0 4.91e-01 100.0% 92.6%
5004725 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.64 57.0 4.80e-01 100.0% 98.1%
3736344 304.28.1.16 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA 0.64 52.0 4.43e-01 100.0% 52.7%
3729608 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 56.0 4.48e-01 100.0% 49.6%
4322579 218.2.1.0 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 0.64 56.0 4.51e-01 100.0% 79.7%
5018729 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.64 57.0 4.69e-01 100.0% 84.5%
4929310 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.64 54.0 4.60e-01 100.0% 63.6%
3597612 312.1.1.0 a+b three layers › HIT-like › HIT-related › HIT-related 0.63 55.0 3.79e-01 100.0% 36.9%
4101838 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.63 53.0 4.51e-01 100.0% 62.7%
4029891 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.63 49.0 4.47e-01 100.0% 63.5%
5018724 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.62 53.0 4.71e-01 100.0% 91.6%
4030190 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 53.0 4.22e-01 100.0% 46.6%
4971261 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.61 53.0 4.05e-01 100.0% 44.0%
3690806 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.61 51.0 4.11e-01 100.0% 68.9%
3575538 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.61 43.0 3.65e-01 100.0% 43.6%
3536897 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 42.0 3.46e-01 88.7% 39.1%
3480319 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.61 50.0 4.20e-01 100.0% 52.7%
2093009 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.60 49.0 4.36e-01 100.0% 61.5%
3223328 304.8.1.78 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7637 0.60 49.0 4.28e-01 100.0% 57.1%
3876560 328.8.1.1 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.60 51.0 3.86e-01 100.0% 50.3%
4350044 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.60 49.0 4.30e-01 100.0% 59.0%
991697 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.60 50.0 4.31e-01 100.0% 58.6%
3519584 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 47.0 3.89e-01 100.0% 48.2%
3269973 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 49.0 4.35e-01 100.0% 62.1%
3167839 873.1.1.4 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP 0.59 50.0 3.62e-01 100.0% 50.2%
4022579 314.1.1.28 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › GDH_2nd 0.59 51.0 3.50e-01 100.0% 27.4%
3173026 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.57 46.0 3.38e-01 100.0% 32.6%
3715696 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.56 48.0 3.17e-01 100.0% 22.9%
3838588 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.56 45.0 3.12e-01 98.4% 43.4%
3929632 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.56 41.0 3.61e-01 100.0% 49.5%
4483994 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 47.0 2.95e-01 100.0% 16.2%
1916090 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.55 44.0 3.49e-01 100.0% 40.0%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 40.0 3.20e-01 100.0% 34.0%
3731090 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.55 44.0 3.91e-01 100.0% 59.0%
3702503 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.55 44.0 3.96e-01 100.0% 63.3%
3725203 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.54 45.0 2.97e-01 100.0% 19.1%
3962099 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 44.0 3.80e-01 100.0% 56.2%
3225950 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.54 40.0 3.34e-01 100.0% 43.3%
3634551 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.54 47.0 3.12e-01 100.0% 31.9%
3992985 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 40.0 3.66e-01 100.0% 61.2%
3597235 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 40.0 3.01e-01 87.1% 40.8%
3195383 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.52 41.0 3.47e-01 100.0% 50.0%
1789446 2484.1.1.61 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 0.52 43.0 3.21e-01 98.4% 88.1%
2528752 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.52 42.0 3.73e-01 100.0% 60.8%
3536437 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 3.46e-01 100.0% 55.9%
2137789 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.51 39.0 3.42e-01 100.0% 51.9%
3974783 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.51 42.0 3.57e-01 100.0% 53.0%
1824495 2484.1.1.61 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 0.50 43.0 3.15e-01 98.4% 84.0%
4561918 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.50 41.0 3.58e-01 100.0% 64.5%
1385054 2484.1.1.61 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 0.50 42.0 3.19e-01 100.0% 88.2%
3593297 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 39.0 3.43e-01 100.0% 53.6%