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MN908687.1__QIG58193.1__SEA_SKOG_41__00041

Bact-Vir

MN908687.1__QIG58193.1__SEA_SKOG_41__00041

Identity

Accession:
MN908687 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skogvirus› Gordonia_phage_Skog

TaxID: 2704033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-58
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 2.97e-01 100.0% 46.2%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.15e-01 77.8% 63.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 2.60e-01 100.0% 49.2%
4za3A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 42.0 3.12e-01 96.3% 85.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4466877 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.61 42.0 3.19e-01 72.2% 30.4%
4947865 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.61 41.0 4.30e-01 72.2% 92.0%
3432242 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.57 38.0 3.10e-01 72.2% 35.7%
5069260 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 39.0 4.02e-01 74.1% 94.0%
3438309 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.53 42.0 2.64e-01 87.0% 24.7%
D2 high residues 73-175
PDB
Domain cluster: rep: NC_054723.1__YP_010058812.1__KHQ83_gp023__00023__DFULL