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MN908687.1__QIG58353.1__SEA_SKOG_201__00201

Bact-Vir

MN908687.1__QIG58353.1__SEA_SKOG_201__00201

Identity

Accession:
MN908687 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skogvirus› Gordonia_phage_Skog

TaxID: 2704033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.63 49.0 3.90e-01 89.3% 96.7%
2mouA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 45.0 3.07e-01 80.4% 77.3%
2d1cA01 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 48.0 2.95e-01 91.1% 45.1%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.58 40.0 3.14e-01 73.2% 68.2%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 40.0 3.03e-01 83.9% 63.7%
2jx5A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 37.0 3.52e-01 80.4% 60.9%
1m0wA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.51 33.0 2.61e-01 100.0% 27.1%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 39.0 2.91e-01 96.4% 59.9%
3h0lA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.51 39.0 2.40e-01 92.9% 33.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587620 304.55.1.22 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL 0.65 47.0 3.25e-01 80.4% 98.1%
3962372 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.62 42.0 3.73e-01 71.4% 83.5%
4307412 181.1.1.27 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ATP-cone 0.60 46.0 4.15e-01 89.3% 94.1%
4081834 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 40.0 3.32e-01 75.0% 82.7%
3597362 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 40.0 3.26e-01 76.8% 64.3%
4927251 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.56 39.0 3.36e-01 100.0% 43.0%
4530645 2485.1.1.8 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Calsequestrin 0.56 42.0 3.15e-01 85.7% 53.1%
4926797 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 45.0 3.62e-01 100.0% 61.5%
3823795 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 40.0 2.68e-01 83.9% 59.2%
5041315 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 40.0 3.29e-01 100.0% 44.0%
3254128 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 40.0 3.54e-01 80.4% 68.2%
3475576 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.54 39.0 3.58e-01 78.6% 64.0%
4047031 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 37.0 3.09e-01 76.8% 72.2%
4987387 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.53 39.0 2.70e-01 76.8% 88.9%
3424667 375.1.1.227 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › XH 0.53 39.0 3.40e-01 82.1% 89.5%
3609408 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 2.37e-01 89.3% 21.5%
4362229 327.10.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.52 38.0 3.40e-01 83.9% 74.4%
3296120 3922.1.1.126 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › XH 0.52 41.0 3.47e-01 91.1% 86.0%
3604523 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.07e-01 83.9% 88.3%
4220642 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 39.0 2.79e-01 89.3% 61.5%
5013701 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.50 41.0 3.44e-01 96.4% 82.9%
3587660 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.50 35.0 2.73e-01 75.0% 33.6%
5064712 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 39.0 2.90e-01 92.9% 73.7%
3397878 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.50 40.0 2.53e-01 100.0% 73.3%